Gene annotation
Transcriptome id Sobic.001G502300.1
Synonym Sb01g046920, ethylene response factor 13, SbERF13
Functional annotation Not investigated (PubMedID : 23766026)
AP2 domain containing protein, expressed
UniProt A0A1B6QQI7
Pfam PF00847
Panther DB PTHR31190 PTHR31190:SF26
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006355; regulation of transcription, DNA-templated GO:0003700DNA-binding transcription factor activity


Orthologs (automatic annotation)
TAIR AT3G23230 : Integrase-type DNA-binding superfamily protein
RAP-DB (Rice) LOC_Os03g05590.1 : AP2 domain containing protein, expressed
MaizeGDB (Corn) Zm00025a046712 , Zm00025a035951 , Zm00025a055020 , Zm00025a022855 , Zm00025a033320 , Zm00025a057002 , Zm00025a005425 , Zm00025a053203 , Zm00025a001066 , Zm00025a045437 , Zm00025a021006 , Zm00025a022123 , Zm00025a038708 , Zm00025a033171 , Zm00025a009843 , Zm00025a000671
Brachypodium KQJ91599 , KQJ90021 , KQJ98629 , PNT61818 , KQK00491 , PNT62439 , KQJ98221 , KQK23628 , KQK12503 , KQJ86112 , PNT66677 , KQJ93405 , KQJ94686 , KQK10781
Barley HORVU6Hr1G060220.6 , HORVU6Hr1G060220.7 , HORVU6Hr1G060220.4 , HORVU6Hr1G060220.5 , HORVU6Hr1G060220.3 , HORVU6Hr1G060220.2 , HORVU6Hr1G060220.1 , HORVU5Hr1G018720.1 , HORVU7Hr1G037180.2 , HORVU3Hr1G030310.1 , HORVU7Hr1G037180.1 , HORVU6Hr1G074970.3 , HORVU6Hr1G074970.2 , HORVU6Hr1G074970.1 , HORVU4Hr1G080300.1 , HORVU5Hr1G058270.1 , HORVU5Hr1G058270.2 , HORVU5Hr1G058270.5 , HORVU5Hr1G058270.4 , HORVU5Hr1G058270.6 , HORVU4Hr1G000960.1 , HORVU6Hr1G060140.3 , HORVU6Hr1G060140.1
Wheat TraesCS5D02G200900 , TraesCS4A02G005600 , TraesCS5B02G193200 , TraesCS4A02G035400
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G141550 - -
2 Sobic.002G302400 SAM dependent carboxyl methyltransferase, putative, expressed -
3 Sobic.008G148700 B3 DNA binding domain containing protein, expressed -
4 Sobic.003G058400 annexin, putative, expressed -
5 Sobic.005G082950 - -
6 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
7 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
8 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
9 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
10 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
11 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
12 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
13 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
14 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
15 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
16 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
17 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
18 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
19 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
20 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic001G502300 Sobic001G502300 Sobic003G141550 Sobic003G141550 Sobic001G502300--Sobic003G141550 Sobic002G302400 Sobic002G302400 Sobic001G502300--Sobic002G302400 Sobic008G148700 Sobic008G148700 Sobic001G502300--Sobic008G148700 Sobic003G058400 Sobic003G058400 Sobic001G502300--Sobic003G058400 Sobic005G082950 Sobic005G082950 Sobic001G502300--Sobic005G082950 Sobic001G272300 Sobic001G272300 Sobic001G502300--Sobic001G272300 Sobic003G141550--Sobic003G058400 Sobic003G141550--Sobic005G082950 Sobic010G229200 Sobic010G229200 Sobic003G141550--Sobic010G229200 Sobic003G141550--Sobic001G272300 Sobic002G302400--Sobic001G272300 Sobic002G057550 Sobic002G057550 Sobic008G148700--Sobic002G057550 Sobic008G148700--Sobic001G272300 Sobic003G058400--Sobic001G272300 Sobic005G082950--Sobic001G272300 Sobic001G272300--Sobic001G272300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.