Gene annotation
Transcriptome id Sobic.002G384800.1
Synonym Sb02g040090
Functional annotation pentatricopeptide, putative, expressed
UniProt A0A1W0W7D9
Pfam PF01535
Panther DB PTHR24015 PTHR24015:SF462
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G26900 : Pentatricopeptide repeat (PPR) superfamily protein
RAP-DB (Rice) LOC_Os08g38610.1 : pentatricopeptide, putative, expressed
MaizeGDB (Corn) Zm00025a048843
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G482500 ubiquitin carboxyl-terminal hydrolase, family 1, putative, expressed -
2 Sobic.005G201800 OsFBX230 - F-box domain containing protein, expressed -
3 Sobic.001G200400 - -
4 Sobic.001G406600 MBTB58 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
5 Sobic.005G120433 - -
6 Sobic.005G029866 - -
7 Sobic.002G289701 - -
8 Sobic.008G045100 - -
9 Sobic.003G190701 - -
10 Sobic.009G125700 hypothetical protein -
11 Sobic.001G234700 AP2 domain containing protein, expressed -
12 Sobic.001G234700 AP2 domain containing protein, expressed -
13 Sobic.001G234700 AP2 domain containing protein, expressed -
14 Sobic.001G234700 AP2 domain containing protein, expressed -
15 Sobic.001G234700 AP2 domain containing protein, expressed -
16 Sobic.001G234700 AP2 domain containing protein, expressed -
17 Sobic.001G234700 AP2 domain containing protein, expressed -
18 Sobic.001G234700 AP2 domain containing protein, expressed -
19 Sobic.001G234700 AP2 domain containing protein, expressed -
20 Sobic.001G234700 AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic002G384800 Sobic002G384800 Sobic001G482500 Sobic001G482500 Sobic002G384800--Sobic001G482500 Sobic005G201800 Sobic005G201800 Sobic002G384800--Sobic005G201800 Sobic001G200400 Sobic001G200400 Sobic002G384800--Sobic001G200400 Sobic001G406600 Sobic001G406600 Sobic002G384800--Sobic001G406600 Sobic005G120433 Sobic005G120433 Sobic002G384800--Sobic005G120433 Sobic005G029866 Sobic005G029866 Sobic002G384800--Sobic005G029866 Sobic002G289701 Sobic002G289701 Sobic002G384800--Sobic002G289701 Sobic008G045100 Sobic008G045100 Sobic002G384800--Sobic008G045100 Sobic003G190701 Sobic003G190701 Sobic002G384800--Sobic003G190701 Sobic004G173800 Sobic004G173800 Sobic001G482500--Sobic004G173800 Sobic001G152240 Sobic001G152240 Sobic001G482500--Sobic001G152240 Sobic008G053700 Sobic008G053700 Sobic001G482500--Sobic008G053700 Sobic006G004700 Sobic006G004700 Sobic001G482500--Sobic006G004700 Sobic002G103400 Sobic002G103400 Sobic001G482500--Sobic002G103400 Sobic006G076700 Sobic006G076700 Sobic001G482500--Sobic006G076700 Sobic003G046000 Sobic003G046000 Sobic001G482500--Sobic003G046000 Sobic004G184900 Sobic004G184900 Sobic001G482500--Sobic004G184900 Sobic005G144101 Sobic005G144101 Sobic001G482500--Sobic005G144101 Sobic005G201800--Sobic001G200400 Sobic005G201800--Sobic003G190701 Sobic001G234700 Sobic001G234700 Sobic005G201800--Sobic001G234700 Sobic001G200400--Sobic001G234700 Sobic001G406600--Sobic005G120433 Sobic001G406600--Sobic001G234700 Sobic005G120433--Sobic001G406600 Sobic005G120433--Sobic001G234700 Sobic006G258200 Sobic006G258200 Sobic005G029866--Sobic006G258200 Sobic010G081500 Sobic010G081500 Sobic005G029866--Sobic010G081500 Sobic009G159800 Sobic009G159800 Sobic005G029866--Sobic009G159800 Sobic009G113300 Sobic009G113300 Sobic005G029866--Sobic009G113300 Sobic002G289601 Sobic002G289601 Sobic005G029866--Sobic002G289601 Sobic005G029866--Sobic006G076700 Sobic001G160300 Sobic001G160300 Sobic005G029866--Sobic001G160300 Sobic002G084100 Sobic002G084100 Sobic005G029866--Sobic002G084100 Sobic003G245101 Sobic003G245101 Sobic005G029866--Sobic003G245101 Sobic008G045232 Sobic008G045232 Sobic002G289701--Sobic008G045232 Sobic002G191300 Sobic002G191300 Sobic002G289701--Sobic002G191300 Sobic005G030200 Sobic005G030200 Sobic002G289701--Sobic005G030200 Sobic001G189800 Sobic001G189800 Sobic002G289701--Sobic001G189800 Sobic002G289701--Sobic003G190701 Sobic009G125700 Sobic009G125700 Sobic002G289701--Sobic009G125700 Sobic002G289701--Sobic008G045100 Sobic002G289701--Sobic001G234700 Sobic001G358101 Sobic001G358101 Sobic008G045100--Sobic001G358101 Sobic008G045100--Sobic003G190701 Sobic004G162800 Sobic004G162800 Sobic008G045100--Sobic004G162800 Sobic008G045100--Sobic001G234700 Sobic003G190701--Sobic001G358101 Sobic003G190701--Sobic004G162800 Sobic003G190701--Sobic001G234700
Octagon: transcription factors


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