Gene annotation
| Transcriptome id | Sobic.003G090300.2 |
|---|---|
| Synonym | |
| Functional annotation | expressed protein |
| UniProt | A0A1W0VWB1 |
| Pfam | PF03145 |
| Panther DB | PTHR10315 PTHR10315:SF40 |
| NCBI CDD | - |
| KEGG Orthology | K04506; E3 ubiquitin-protein ligase SIAH1 |
| Gene Ontology | GO:0007275; multicellular organism development GO:0006511ubiquitin-dependent protein catabolic process GO:0005634nucleus |
Orthologs (automatic annotation)
| TAIR | AT5G37890 : Protein with RING/U-box and TRAF-like domains |
|---|---|
| RAP-DB (Rice) | LOC_Os01g55640.1 : seven in absentia protein family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a023666 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.005G138100 | - | - |
| 2 | Sobic.005G175150 | - | - |
| 3 | Sobic.004G090100 | - | - |
| 4 | Sobic.001G220132 | - | - |
| 5 | Sobic.001G220132 | - | - |
| 6 | Sobic.001G220132 | - | - |
| 7 | Sobic.001G220132 | - | - |
| 8 | Sobic.001G220132 | - | - |
| 9 | Sobic.001G220132 | - | - |
| 10 | Sobic.001G220132 | - | - |
| 11 | Sobic.001G220132 | - | - |
| 12 | Sobic.009G196600 | expressed protein | - |
| 13 | Sobic.010G136100 | "kafirin seed storage protein, delta-kafirin precursor"(PubMedID : 21853065)@- | - |
| 14 | Sobic.001G027000 | expressed protein | - |
| 15 | Sobic.002G016700 | OsFBLD5 - F-box, LRR and FBD domain containing protein, expressed | - |
| 16 | Sobic.004G076900 | - | - |
| 17 | Sobic.003G211266 | - | - |
| 18 | Sobic.008G181250 | - | - |
| 19 | Sobic.005G189800 | - | - |
| 20 | Sobic.009G019700 | - | - |
Gene co-expression network
Octagon: transcription factors
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