Gene annotation
Transcriptome id Sobic.003G156600.1
Synonym AGL36, Sb03g013650
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
OsMADS93 - MADS-box family gene with M-beta type-box, expressed
UniProt C5XJU0
Pfam PF00319
Panther DB PTHR11945 PTHR11945:SF168
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0003677; DNA binding


Orthologs (automatic annotation)
TAIR AT5G55690 : MADS-box transcription factor family protein
RAP-DB (Rice) LOC_Os01g23760.1 : OsMADS93 - MADS-box family gene with M-beta type-box, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G123000 - -
2 Sobic.003G008400 acetyltransferase, GNAT family protein, expressed -
3 Sobic.005G080075 - -
4 Sobic.001G100650 - -
5 Sobic.010G064050 - -
6 Sobic.009G073200 expressed protein -
7 Sobic.003G254400 expressed protein -
8 Sobic.001G413400 matrix attachment region binding protein, putative, expressed -
9 Sobic.002G082350 - -
10 Sobic.003G318600 - -
11 Sobic.009G190100 expressed protein -
12 Sobic.002G313850 - -
13 Sobic.003G360500 glycosyl transferase, putative, expressed K00750: GYG1, glycogenin
14 Sobic.007G203600 transferase family protein, putative, expressed -
15 Sobic.008G157400 disease resistance protein RGA2, putative, expressed -
16 Sobic.001G101650 - -
17 Sobic.009G082050 - -
18 Sobic.009G055700 splicing factor, arginine/serine-rich, putative, expressed K12896: splicing factor, arginine/serine-rich 7
19 Sobic.001G461101 - -
20 Sobic.006G182401 - -


Gene co-expression network
sample Sobic003G156600 Sobic003G156600 Sobic010G123000 Sobic010G123000 Sobic003G156600--Sobic010G123000 Sobic003G008400 Sobic003G008400 Sobic003G156600--Sobic003G008400 Sobic005G080075 Sobic005G080075 Sobic003G156600--Sobic005G080075 Sobic001G100650 Sobic001G100650 Sobic003G156600--Sobic001G100650 Sobic010G064050 Sobic010G064050 Sobic003G156600--Sobic010G064050 Sobic009G073200 Sobic009G073200 Sobic003G156600--Sobic009G073200 Sobic003G254400 Sobic003G254400 Sobic003G156600--Sobic003G254400 Sobic001G413400 Sobic001G413400 Sobic003G156600--Sobic001G413400 Sobic002G082350 Sobic002G082350 Sobic003G156600--Sobic002G082350 Sobic010G123000--Sobic005G080075 Sobic010G123000--Sobic001G100650 Sobic010G123000--Sobic010G064050 Sobic010G123000--Sobic003G008400 Sobic010G123000--Sobic002G082350 Sobic010G123000--Sobic003G254400 Sobic010G123000--Sobic009G073200 Sobic003G318600 Sobic003G318600 Sobic010G123000--Sobic003G318600 Sobic003G360500 Sobic003G360500 Sobic010G123000--Sobic003G360500 Sobic003G008400--Sobic005G080075 Sobic003G008400--Sobic003G254400 Sobic003G008400--Sobic001G100650 Sobic003G008400--Sobic010G064050 Sobic003G008400--Sobic003G318600 Sobic003G008400--Sobic002G082350 Sobic003G008400--Sobic003G360500 Sobic003G008400--Sobic009G073200 Sobic003G008400--Sobic001G413400 Sobic005G080075--Sobic001G100650 Sobic005G080075--Sobic010G064050 Sobic005G080075--Sobic003G008400 Sobic005G080075--Sobic002G082350 Sobic005G080075--Sobic003G254400 Sobic005G080075--Sobic009G073200 Sobic005G080075--Sobic003G318600 Sobic005G080075--Sobic003G360500 Sobic005G080075--Sobic001G413400 Sobic001G100650--Sobic001G100650 Sobic001G100650--Sobic005G080075 Sobic001G100650--Sobic002G082350 Sobic001G100650--Sobic003G008400 Sobic001G100650--Sobic003G254400 Sobic001G100650--Sobic009G073200 Sobic001G100650--Sobic003G318600 Sobic001G100650--Sobic003G360500 Sobic002G313850 Sobic002G313850 Sobic001G100650--Sobic002G313850 Sobic010G064050--Sobic001G100650 Sobic010G064050--Sobic005G080075 Sobic010G064050--Sobic002G082350 Sobic010G064050--Sobic003G008400 Sobic010G064050--Sobic003G254400 Sobic010G064050--Sobic009G073200 Sobic010G064050--Sobic003G318600 Sobic010G064050--Sobic003G360500 Sobic010G064050--Sobic002G313850 Sobic009G073200--Sobic010G064050 Sobic009G073200--Sobic001G100650 Sobic009G073200--Sobic005G080075 Sobic009G073200--Sobic002G082350 Sobic009G073200--Sobic003G008400 Sobic009G073200--Sobic003G254400 Sobic009G073200--Sobic003G318600 Sobic009G073200--Sobic003G360500 Sobic009G073200--Sobic002G313850 Sobic003G254400--Sobic003G008400 Sobic003G254400--Sobic005G080075 Sobic003G254400--Sobic001G100650 Sobic003G254400--Sobic010G064050 Sobic003G254400--Sobic003G318600 Sobic003G254400--Sobic002G082350 Sobic003G254400--Sobic003G360500 Sobic003G254400--Sobic009G073200 Sobic003G254400--Sobic001G413400 Sobic001G413400--Sobic005G080075 Sobic001G413400--Sobic001G100650 Sobic001G413400--Sobic010G064050 Sobic001G413400--Sobic003G008400 Sobic001G413400--Sobic002G082350 Sobic001G413400--Sobic003G254400 Sobic001G413400--Sobic009G073200 Sobic001G413400--Sobic002G313850 Sobic001G413400--Sobic003G318600 Sobic002G082350--Sobic010G064050 Sobic002G082350--Sobic001G100650 Sobic002G082350--Sobic005G080075 Sobic002G082350--Sobic003G008400 Sobic002G082350--Sobic009G073200 Sobic002G082350--Sobic003G254400 Sobic008G191800 Sobic008G191800 Sobic002G082350--Sobic008G191800 Sobic002G082350--Sobic002G313850 Sobic007G145300 Sobic007G145300 Sobic002G082350--Sobic007G145300
Octagon: transcription factors


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