Gene annotation
Transcriptome id Sobic.004G349550.1
Synonym -
Functional annotation -
UniProt A0A1Z5RQM8
Pfam PF01554
Panther DB PTHR11206 PTHR11206:SF109
NCBI CDD KOG1347; Uncharacterized membrane protein, predicted efflux pump
KEGG Orthology K03327; TC.MATE, SLC47A, norM, mdtK, multidrug resistance protein, MATE family
Gene Ontology GO:0016020; membrane GO:0015297antiporter activity GO:0006855drug transmembrane transport


Orthologs (automatic annotation)
TAIR AT4G00350 : MATE efflux family protein
RAP-DB (Rice) LOC_Os08g44870.1 : MATE efflux family protein, putative, expressed
MaizeGDB (Corn) Zm00025a001018 , Zm00025a032766 , Zm00025a007083 , Zm00025a031207 , Zm00025a007368
Brachypodium KQK23215 , KQK14108 , KQK16109 , PNT69457 , PNT74408 , KQK01431 , KQK01430
Barley HORVU7Hr1G027270.11 , HORVU7Hr1G027270.10 , HORVU7Hr1G027270.13 , HORVU7Hr1G027270.12 , HORVU4Hr1G011690.4 , HORVU4Hr1G011690.7 , HORVU4Hr1G011690.1 , HORVU4Hr1G011690.3 , HORVU4Hr1G011690.2 , HORVU7Hr1G027270.1 , HORVU7Hr1G027270.3 , HORVU7Hr1G027270.2 , HORVU7Hr1G027270.5 , HORVU7Hr1G027270.4 , HORVU7Hr1G027270.7 , HORVU7Hr1G027270.6 , HORVU6Hr1G091840.2 , HORVU6Hr1G091840.1 , HORVU6Hr1G091850.1 , HORVU6Hr1G091850.3 , HORVU6Hr1G091850.2 , HORVU7Hr1G049240.5 , HORVU7Hr1G049240.6 , HORVU7Hr1G049240.2 , HORVU7Hr1G049240.3 , HORVU2Hr1G117540.2 , HORVU2Hr1G117540.3 , HORVU2Hr1G117540.1 , HORVU2Hr1G117540.6 , HORVU2Hr1G117540.7 , HORVU2Hr1G117540.4 , HORVU2Hr1G117540.5 , HORVU2Hr1G117540.8 , HORVU2Hr1G117540.9
Wheat TraesCS7A02G272800 , TraesCS7B02G030600 , TraesCS6D02G384400 , TraesCS7D02G272900 , TraesCS6A02G400200 , TraesCS4D02G068800 , TraesCS7D02G240600 , TraesCS7A02G241600 , TraesCS7A02G130300 , TraesCS7B02G137200 , TraesCS7D02G469000 , TraesCS7B02G384300 , TraesCS7D02G129700 , TraesCS7A02G482100 , TraesCS6B02G440400 , TraesCS4A02G404500 , TraesCS3A02G300400 , TraesCS7B02G170800 , TraesCS4B02G304300
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G344300 - -
2 Sobic.008G149300 B3 DNA binding domain containing protein, expressed -
3 Sobic.009G103800 "Phylogenetic analysis of canonical DREB1 and DREB2 genes in sorghum with those genes in maize, rice, and Arabidopsis. "(PubMedID : 24086146)@Not investigated(PubMedID : 23766026)@ABA signaling component(PubMedID : 24151305)@AP2 domain containing protein, expressed K09286: EREBP-like factor
4 Sobic.006G167700 oleosin, putative, expressed -
5 Sobic.005G184700 - -
6 Sobic.005G184800 - -
7 Sobic.001G165600 THION1 - Plant thionin family protein precursor, putative, expressed -
8 Sobic.002G184700 expressed protein -
9 Sobic.001G122600 expressed protein -
10 Sobic.001G122600 expressed protein -
11 Sobic.001G122600 expressed protein -
12 Sobic.001G122600 expressed protein -
13 Sobic.001G122600 expressed protein -
14 Sobic.001G122600 expressed protein -
15 Sobic.001G122600 expressed protein -
16 Sobic.001G122600 expressed protein -
17 Sobic.001G122600 expressed protein -
18 Sobic.001G122600 expressed protein -
19 Sobic.001G122600 expressed protein -
20 Sobic.001G122600 expressed protein -


Gene co-expression network
sample Sobic004G349550 Sobic004G349550 Sobic001G344300 Sobic001G344300 Sobic004G349550--Sobic001G344300 Sobic008G149300 Sobic008G149300 Sobic004G349550--Sobic008G149300 Sobic009G103800 Sobic009G103800 Sobic004G349550--Sobic009G103800 Sobic006G167700 Sobic006G167700 Sobic004G349550--Sobic006G167700 Sobic005G184700 Sobic005G184700 Sobic004G349550--Sobic005G184700 Sobic005G184800 Sobic005G184800 Sobic004G349550--Sobic005G184800 Sobic001G165600 Sobic001G165600 Sobic004G349550--Sobic001G165600 Sobic002G184700 Sobic002G184700 Sobic004G349550--Sobic002G184700 Sobic001G122600 Sobic001G122600 Sobic004G349550--Sobic001G122600 Sobic001G344300--Sobic009G103800 Sobic001G344300--Sobic002G184700 Sobic001G344300--Sobic006G167700 Sobic001G344300--Sobic004G349550 Sobic002G046000 Sobic002G046000 Sobic001G344300--Sobic002G046000 Sobic001G344300--Sobic001G165600 Sobic001G166900 Sobic001G166900 Sobic001G344300--Sobic001G166900 Sobic003G372600 Sobic003G372600 Sobic001G344300--Sobic003G372600 Sobic002G211300 Sobic002G211300 Sobic001G344300--Sobic002G211300 Sobic008G149300--Sobic001G122600 Sobic009G103800--Sobic002G184700 Sobic009G103800--Sobic001G344300 Sobic009G103800--Sobic006G167700 Sobic009G103800--Sobic002G046000 Sobic009G103800--Sobic004G349550 Sobic009G103800--Sobic001G166900 Sobic007G025600 Sobic007G025600 Sobic009G103800--Sobic007G025600 Sobic009G103800--Sobic003G372600 Sobic001G534200 Sobic001G534200 Sobic009G103800--Sobic001G534200 Sobic006G167700--Sobic002G184700 Sobic006G167700--Sobic009G103800 Sobic006G167700--Sobic001G344300 Sobic006G167700--Sobic001G166900 Sobic006G167700--Sobic001G165600 Sobic006G167700--Sobic002G046000 Sobic006G167700--Sobic002G211300 Sobic006G167700--Sobic003G372600 Sobic006G167700--Sobic004G349550 Sobic005G184700--Sobic005G184800 Sobic005G184700--Sobic001G122600 Sobic005G184800--Sobic001G122600 Sobic010G125000 Sobic010G125000 Sobic001G165600--Sobic010G125000 Sobic001G165600--Sobic006G167700 Sobic001G165600--Sobic001G122600 Sobic002G184700--Sobic009G103800 Sobic002G184700--Sobic006G167700 Sobic002G184700--Sobic001G344300 Sobic002G184700--Sobic002G046000 Sobic002G184700--Sobic003G372600 Sobic002G184700--Sobic001G166900 Sobic002G184700--Sobic002G211300 Sobic001G208500 Sobic001G208500 Sobic002G184700--Sobic001G208500 Sobic002G184700--Sobic004G349550 Sobic001G122600--Sobic001G122600
Octagon: transcription factors


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