Gene annotation
Transcriptome id Sobic.005G030200.1
Synonym
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt A0A1B6PPV5
Pfam PF13639
Panther DB PTHR22763 PTHR22763:SF60
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT3G19950 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os12g04590.2 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G191300 expressed protein -
2 Sobic.003G083100 - -
3 Sobic.002G289701 - -
4 Sobic.001G406600 MBTB58 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
5 Sobic.005G120433 - -
6 Sobic.008G045100 - -
7 Sobic.001G234700 AP2 domain containing protein, expressed -
8 Sobic.001G234700 AP2 domain containing protein, expressed -
9 Sobic.001G234700 AP2 domain containing protein, expressed -
10 Sobic.001G234700 AP2 domain containing protein, expressed -
11 Sobic.001G234700 AP2 domain containing protein, expressed -
12 Sobic.001G234700 AP2 domain containing protein, expressed -
13 Sobic.001G234700 AP2 domain containing protein, expressed -
14 Sobic.001G234700 AP2 domain containing protein, expressed -
15 Sobic.001G234700 AP2 domain containing protein, expressed -
16 Sobic.001G234700 AP2 domain containing protein, expressed -
17 Sobic.001G234700 AP2 domain containing protein, expressed -
18 Sobic.001G234700 AP2 domain containing protein, expressed -
19 Sobic.001G234700 AP2 domain containing protein, expressed -
20 Sobic.001G234700 AP2 domain containing protein, expressed -


Gene co-expression network
sample Sobic005G030200 Sobic005G030200 Sobic002G191300 Sobic002G191300 Sobic005G030200--Sobic002G191300 Sobic003G083100 Sobic003G083100 Sobic005G030200--Sobic003G083100 Sobic002G289701 Sobic002G289701 Sobic005G030200--Sobic002G289701 Sobic001G406600 Sobic001G406600 Sobic005G030200--Sobic001G406600 Sobic005G120433 Sobic005G120433 Sobic005G030200--Sobic005G120433 Sobic008G045100 Sobic008G045100 Sobic005G030200--Sobic008G045100 Sobic001G234700 Sobic001G234700 Sobic005G030200--Sobic001G234700 Sobic002G191300--Sobic001G234700 Sobic003G083100--Sobic001G234700 Sobic008G045232 Sobic008G045232 Sobic002G289701--Sobic008G045232 Sobic002G289701--Sobic002G191300 Sobic002G289701--Sobic005G030200 Sobic001G189800 Sobic001G189800 Sobic002G289701--Sobic001G189800 Sobic003G190701 Sobic003G190701 Sobic002G289701--Sobic003G190701 Sobic009G125700 Sobic009G125700 Sobic002G289701--Sobic009G125700 Sobic002G289701--Sobic008G045100 Sobic002G289701--Sobic001G234700 Sobic001G406600--Sobic005G120433 Sobic001G406600--Sobic001G234700 Sobic005G120433--Sobic001G406600 Sobic005G120433--Sobic001G234700 Sobic001G358101 Sobic001G358101 Sobic008G045100--Sobic001G358101 Sobic008G045100--Sobic003G190701 Sobic004G162800 Sobic004G162800 Sobic008G045100--Sobic004G162800 Sobic008G045100--Sobic001G234700 Sobic001G234700--Sobic001G234700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.