Gene annotation
Transcriptome id Sobic.006G132300.1
Synonym ATCHITIV, Sb06g021230, EP3, CHIV, ATEP3
Functional annotation "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence." (PubMedID : 27586543)
CHIT3 - Chitinase family protein precursor, expressed
UniProt C5YBE8
Pfam PF00187 PF00182
Panther DB PTHR22595 PTHR22595:SF60
NCBI CDD KOG4742; Predicted chitinase
KEGG Orthology K01183; chitinase
Gene Ontology GO:0008061; chitin binding GO:0016998cell wall macromolecule catabolic process GO:0006032chitin catabolic process GO:0004568chitinase activity


Orthologs (automatic annotation)
TAIR AT3G54420 : homolog of carrot EP3-3 chitinase
RAP-DB (Rice) LOC_Os04g41680.1 : CHIT3 - Chitinase family protein precursor, expressed
MaizeGDB (Corn) Zm00025a036179 , Zm00025a010855 , Zm00025a010854 , Zm00025a010853 , Zm00025a056371
Brachypodium KQK04002
Barley HORVU0Hr1G016310.1 , HORVU0Hr1G016310.3 , HORVU0Hr1G016310.4 , HORVU0Hr1G016310.2
Wheat TraesCS6A02G216100 , TraesCS6B02G246800 , TraesCS6D02G199500
Populus -


JBrowse

Open New Page


cDNA sequences
Sobic.006G132300


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G169300 WIP5 - Wound-induced protein precursor, expressed -
2 Sobic.001G381250 - -
3 Sobic.001G381250 - -
4 Sobic.001G381250 - -
5 Sobic.001G381250 - -
6 Sobic.001G381250 - -
7 Sobic.001G381250 - -
8 Sobic.001G381250 - -
9 Sobic.001G381250 - -
10 Sobic.001G381250 - -
11 Sobic.001G381250 - -
12 Sobic.001G381250 - -
13 Sobic.001G381250 - -
14 Sobic.001G381250 - -
15 Sobic.001G381250 - -
16 Sobic.001G381250 - -
17 Sobic.001G381250 - -
18 Sobic.005G193100 "alpha-kafirin locus, highly digestible high-lysine (hdhl) mutant P721Q"(PubMedID : 23948869)@- -
19 Sobic.005G192801 "alpha-kafirin locus, highly digestible high-lysine (hdhl) mutant P721Q"(PubMedID : 23948869) -
20 Sobic.005G192901 "alpha-kafirin locus, highly digestible high-lysine (hdhl) mutant P721Q"(PubMedID : 23948869) -


Gene co-expression network
sample Sobic006G132300 Sobic006G132300 Sobic005G169300 Sobic005G169300 Sobic006G132300--Sobic005G169300 Sobic001G381250 Sobic001G381250 Sobic006G132300--Sobic001G381250 Sobic005G169300--Sobic001G381250 Sobic001G381250--Sobic001G381250
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.