Gene annotation
Transcriptome id Sobic.006G178900.1
Synonym Sb06g025345
Functional annotation polygalacturonase, putative, expressed
UniProt A0A1B6PML1
Pfam PF12708
Panther DB PTHR31375 PTHR31375:SF45
NCBI CDD -
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G35670 : Pectin lyase-like superfamily protein
RAP-DB (Rice) LOC_Os07g10740.1 : polygalacturonase, putative, expressed
MaizeGDB (Corn) Zm00025a024414 , Zm00025a036149
Brachypodium KQJ99264
Barley HORVU5Hr1G111650.5 , HORVU5Hr1G111650.4 , HORVU5Hr1G111650.3 , HORVU5Hr1G111650.1 , HORVU5Hr1G111650.2
Wheat TraesCS4B02G086500 , TraesCS6A02G159000 , TraesCS5D02G481800 , TraesCS6D02G153500
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G015200 - -
2 Sobic.007G106200 methyl-CpG binding domain containing protein, expressed -
3 Sobic.005G152400 - -
4 Sobic.005G071250 - -
5 Sobic.006G021500 response regulator receiver domain containing protein, expressed -
6 Sobic.004G048500 - -
7 Sobic.001G209701 - -
8 Sobic.001G209701 - -
9 Sobic.001G209701 - -
10 Sobic.001G209701 - -
11 Sobic.001G209701 - -
12 Sobic.001G209701 - -
13 Sobic.001G209701 - -
14 Sobic.001G209701 - -
15 Sobic.001G209701 - -
16 Sobic.001G209701 - -
17 Sobic.001G209701 - -
18 Sobic.001G209701 - -
19 Sobic.001G209701 - -
20 Sobic.001G209701 - -


Gene co-expression network
sample Sobic006G178900 Sobic006G178900 Sobic004G015200 Sobic004G015200 Sobic006G178900--Sobic004G015200 Sobic007G106200 Sobic007G106200 Sobic006G178900--Sobic007G106200 Sobic005G152400 Sobic005G152400 Sobic006G178900--Sobic005G152400 Sobic005G071250 Sobic005G071250 Sobic006G178900--Sobic005G071250 Sobic006G021500 Sobic006G021500 Sobic006G178900--Sobic006G021500 Sobic004G048500 Sobic004G048500 Sobic006G178900--Sobic004G048500 Sobic001G209701 Sobic001G209701 Sobic006G178900--Sobic001G209701 Sobic010G120100 Sobic010G120100 Sobic004G015200--Sobic010G120100 Sobic002G031200 Sobic002G031200 Sobic004G015200--Sobic002G031200 Sobic005G223300 Sobic005G223300 Sobic004G015200--Sobic005G223300 Sobic004G315900 Sobic004G315900 Sobic004G015200--Sobic004G315900 Sobic002G058000 Sobic002G058000 Sobic004G015200--Sobic002G058000 Sobic005G189700 Sobic005G189700 Sobic004G015200--Sobic005G189700 Sobic005G080700 Sobic005G080700 Sobic004G015200--Sobic005G080700 Sobic004G015200--Sobic007G106200 Sobic004G015200--Sobic004G048500 Sobic007G106200--Sobic001G209701 Sobic001G312200 Sobic001G312200 Sobic005G152400--Sobic001G312200 Sobic005G153100 Sobic005G153100 Sobic005G152400--Sobic005G153100 Sobic001G345600 Sobic001G345600 Sobic005G152400--Sobic001G345600 Sobic005G152400--Sobic004G015200 Sobic002G399700 Sobic002G399700 Sobic005G152400--Sobic002G399700 Sobic008G122300 Sobic008G122300 Sobic005G152400--Sobic008G122300 Sobic008G188300 Sobic008G188300 Sobic005G152400--Sobic008G188300 Sobic005G131100 Sobic005G131100 Sobic005G152400--Sobic005G131100 Sobic002G332000 Sobic002G332000 Sobic005G152400--Sobic002G332000 Sobic005G071250--Sobic006G178900 Sobic005G024000 Sobic005G024000 Sobic005G071250--Sobic005G024000 Sobic005G071250--Sobic004G015200 Sobic005G071250--Sobic005G152400 Sobic005G071250--Sobic007G106200 Sobic005G071250--Sobic001G209701 Sobic006G021500--Sobic007G106200 Sobic006G021500--Sobic001G209701 Sobic004G048500--Sobic001G209701 Sobic001G209701--Sobic001G209701
Octagon: transcription factors


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