Gene annotation
Transcriptome id Sobic.006G190950.1
Synonym -
Functional annotation -
UniProt A0A1Z5REM5
Pfam PF13245 PF13087
Panther DB PTHR10887 PTHR10887:SF373
NCBI CDD KOG1801; tRNA-splicing endonuclease positive effector (SEN1)
KEGG Orthology K10706; SETX, senataxin
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G65810 : P-loop containing nucleoside triphosphate hydrolases superfamily protein
RAP-DB (Rice) LOC_Os04g49270.1 : tRNA-splicing endonuclease positive effector-related, putative, expressed
MaizeGDB (Corn) Zm00025a015423
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.008G106550 - -
2 Sobic.001G030800 RD26, putative, expressed -
3 Sobic.003G178101 - K09490: HSPA5, endoplasmic reticulum chaperone BiP
4 Sobic.003G262000 plant-specific domain TIGR01568 family protein, expressed -
5 Sobic.003G384650 - -
6 Sobic.001G018700 RD26, putative, expressed -
7 Sobic.001G018700 RD26, putative, expressed -
8 Sobic.001G018700 RD26, putative, expressed -
9 Sobic.001G018700 RD26, putative, expressed -
10 Sobic.001G018700 RD26, putative, expressed -
11 Sobic.001G018700 RD26, putative, expressed -
12 Sobic.001G018700 RD26, putative, expressed -
13 Sobic.001G018700 RD26, putative, expressed -
14 Sobic.001G018700 RD26, putative, expressed -
15 Sobic.001G018700 RD26, putative, expressed -
16 Sobic.001G018700 RD26, putative, expressed -
17 Sobic.001G018700 RD26, putative, expressed -
18 Sobic.001G018700 RD26, putative, expressed -
19 Sobic.001G018700 RD26, putative, expressed -
20 Sobic.001G018700 RD26, putative, expressed -


Gene co-expression network
sample Sobic006G190950 Sobic006G190950 Sobic008G106550 Sobic008G106550 Sobic006G190950--Sobic008G106550 Sobic001G030800 Sobic001G030800 Sobic006G190950--Sobic001G030800 Sobic003G178101 Sobic003G178101 Sobic006G190950--Sobic003G178101 Sobic003G262000 Sobic003G262000 Sobic006G190950--Sobic003G262000 Sobic003G384650 Sobic003G384650 Sobic006G190950--Sobic003G384650 Sobic001G018700 Sobic001G018700 Sobic006G190950--Sobic001G018700 Sobic008G106550--Sobic006G190950 Sobic009G067700 Sobic009G067700 Sobic008G106550--Sobic009G067700 Sobic008G106550--Sobic001G018700 Sobic001G030800--Sobic001G018700 Sobic003G178101--Sobic003G384650 Sobic003G178101--Sobic001G030800 Sobic003G178101--Sobic001G018700 Sobic003G020900 Sobic003G020900 Sobic003G262000--Sobic003G020900 Sobic001G129750 Sobic001G129750 Sobic003G262000--Sobic001G129750 Sobic002G430601 Sobic002G430601 Sobic003G262000--Sobic002G430601 Sobic003G262000--Sobic006G190950 Sobic001G302000 Sobic001G302000 Sobic003G262000--Sobic001G302000 Sobic003G405400 Sobic003G405400 Sobic003G262000--Sobic003G405400 Sobic003G262000--Sobic003G384650 Sobic006G080050 Sobic006G080050 Sobic003G262000--Sobic006G080050 Sobic001G539100 Sobic001G539100 Sobic003G262000--Sobic001G539100 Sobic003G384650--Sobic003G178101 Sobic003G384650--Sobic001G018700 Sobic001G018700--Sobic001G018700
Octagon: transcription factors


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