Gene annotation
Transcriptome id Sobic.006G224400.1
Synonym UBQ4, Sb06g029360
Functional annotation ubiquitin family protein, putative, expressed
UniProt C5YGJ5
Pfam PF11976
Panther DB PTHR10666
NCBI CDD KOG0005; Ubiquitin-like protein KOG0001Ubiquitin and ubiquitin-like proteins
KEGG Orthology K08770; ubiquitin C K12158ubiquitin-like protein Nedd8 K04551ubiquitin B
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G20620 : ubiquitin 4
RAP-DB (Rice) LOC_Os06g46770.1 : ubiquitin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a050018 , Zm00025a039850 , Zm00025a013490
Brachypodium KQJ91591 , KQJ93465 , KQK17173 , KQK06725 , KQK17147 , PNT77708 , KQK04197 , KQK17095 , KQK22710 , KQK07353 , KQJ93464 , KQJ93343 , PNT65948
Barley HORVU6Hr1G026280.8 , HORVU6Hr1G026280.9 , HORVU6Hr1G026280.6 , HORVU6Hr1G026280.7 , HORVU6Hr1G026280.4 , HORVU6Hr1G026280.5 , HORVU6Hr1G026280.2 , HORVU6Hr1G026280.3 , HORVU7Hr1G103170.19 , HORVU7Hr1G103170.18 , HORVU7Hr1G103170.17 , HORVU7Hr1G103170.16 , HORVU7Hr1G103170.15 , HORVU7Hr1G103170.14 , HORVU7Hr1G103170.13 , HORVU7Hr1G103170.12 , HORVU7Hr1G103170.11 , HORVU7Hr1G103170.10 , HORVU7Hr1G102840.10 , HORVU7Hr1G102840.11 , HORVU4Hr1G065100.2 , HORVU4Hr1G065100.3 , HORVU5Hr1G019590.13 , HORVU5Hr1G019590.12 , HORVU5Hr1G019590.11 , HORVU5Hr1G019590.10 , HORVU5Hr1G019590.15 , HORVU5Hr1G019590.14 , HORVU7Hr1G103330.6 , HORVU1Hr1G023660.1 , HORVU1Hr1G023660.2 , HORVU1Hr1G023660.3 , HORVU6Hr1G026260.9 , HORVU7Hr1G102840.9 , HORVU5Hr1G019600.3 , HORVU5Hr1G019600.2 , HORVU5Hr1G019600.1 , HORVU5Hr1G019600.7 , HORVU5Hr1G019600.6 , HORVU5Hr1G019600.5 , HORVU5Hr1G019600.4 , HORVU6Hr1G026260.18 , HORVU6Hr1G026260.19 , HORVU6Hr1G026260.16 , HORVU6Hr1G026260.17 , HORVU6Hr1G026260.14 , HORVU6Hr1G026260.15 , HORVU6Hr1G026260.12 , HORVU6Hr1G026260.13 , HORVU6Hr1G026260.10 , HORVU7Hr1G103550.1 , HORVU7Hr1G103550.3 , HORVU7Hr1G103550.2 , HORVU7Hr1G103550.4 , HORVU6Hr1G026200.6 , HORVU6Hr1G026200.7 , HORVU6Hr1G026200.5 , HORVU6Hr1G026200.2 , HORVU6Hr1G026200.3 , HORVU6Hr1G026200.1 , HORVU6Hr1G026200.8 , HORVU7Hr1G102840.4 , HORVU7Hr1G102840.7 , HORVU6Hr1G026260.8 , HORVU7Hr1G102840.1 , HORVU7Hr1G102840.2 , HORVU7Hr1G102840.3 , HORVU6Hr1G026260.6 , HORVU6Hr1G026260.7 , HORVU7Hr1G102840.8 , HORVU6Hr1G026260.1 , HORVU6Hr1G026260.2 , HORVU1Hr1G087690.9 , HORVU1Hr1G087690.8 , HORVU1Hr1G087690.3 , HORVU1Hr1G087690.2 , HORVU1Hr1G087690.1 , HORVU1Hr1G087690.7 , HORVU1Hr1G087690.6 , HORVU1Hr1G087690.5 , HORVU1Hr1G087690.4 , HORVU7Hr1G103330.11 , HORVU7Hr1G103330.10 , HORVU7Hr1G103330.13 , HORVU7Hr1G103330.12 , HORVU7Hr1G103330.14 , HORVU6Hr1G026200.18 , HORVU6Hr1G026200.19 , HORVU6Hr1G026200.15 , HORVU6Hr1G026200.16 , HORVU6Hr1G026200.17 , HORVU6Hr1G026200.11 , HORVU6Hr1G026200.13 , HORVU6Hr1G026260.20 , HORVU7Hr1G103330.9 , HORVU7Hr1G103330.8 , HORVU7Hr1G103330.4 , HORVU7Hr1G103330.7 , HORVU5Hr1G056730.1 , HORVU7Hr1G103330.1 , HORVU7Hr1G103330.3 , HORVU7Hr1G103330.2 , HORVU7Hr1G103160.1 , HORVU7Hr1G103160.2 , HORVU7Hr1G103160.3 , HORVU7Hr1G103160.4 , HORVU6Hr1G016150.5 , HORVU6Hr1G016150.4 , HORVU6Hr1G016150.6 , HORVU6Hr1G016150.1 , HORVU6Hr1G016150.3 , HORVU6Hr1G016150.2 , HORVU6Hr1G021700.4 , HORVU6Hr1G021700.5 , HORVU6Hr1G021700.3 , HORVU6Hr1G021700.1 , HORVU5Hr1G019590.9 , HORVU5Hr1G019590.8 , HORVU5Hr1G019590.3 , HORVU5Hr1G019590.2 , HORVU5Hr1G019590.7 , HORVU5Hr1G019590.6 , HORVU5Hr1G019590.5 , HORVU7Hr1G103380.2 , HORVU0Hr1G025670.1 , HORVU0Hr1G025670.2 , HORVU7Hr1G103170.7 , HORVU7Hr1G103170.6 , HORVU7Hr1G103170.5 , HORVU7Hr1G103170.4 , HORVU7Hr1G103170.3 , HORVU7Hr1G103170.2 , HORVU7Hr1G103170.1 , HORVU7Hr1G103170.9 , HORVU7Hr1G103170.8 , HORVU6Hr1G026280.14 , HORVU6Hr1G026280.15 , HORVU6Hr1G026280.10 , HORVU6Hr1G026280.11 , HORVU6Hr1G026280.12 , HORVU6Hr1G026280.13 , HORVU6Hr1G026200.20 , HORVU0Hr1G038500.1 , HORVU0Hr1G038500.2 , HORVU0Hr1G038500.3 , HORVU7Hr1G109650.2 , HORVU7Hr1G103380.1 , HORVU7Hr1G103330.5 , HORVU7Hr1G103170.20 , HORVU6Hr1G014910.1 , HORVU1Hr1G087690.13 , HORVU1Hr1G087690.12 , HORVU1Hr1G087690.11 , HORVU1Hr1G087690.10 , HORVU1Hr1G087690.17 , HORVU1Hr1G087690.16 , HORVU1Hr1G087690.15 , HORVU1Hr1G087690.14 , HORVU6Hr1G014970.1 , HORVU6Hr1G014970.3 , HORVU6Hr1G014970.2 , HORVU6Hr1G014970.5 , HORVU6Hr1G014970.4 , HORVU6Hr1G014970.7 , HORVU6Hr1G014970.6 , HORVU6Hr1G014970.8
Wheat TraesCS6D02G109600 , TraesCS7D02G443100 , TraesCS7D02G474200 , TraesCS7A02G453300 , TraesCS7D02G474300 , TraesCS6A02G136700 , TraesCS6B02G148000 , TraesCS7A02G466500 , TraesCS2A02G408500 , TraesCS5A02G196400 , TraesCS2D02G405500 , TraesCS7B02G390900 , TraesCS5D02G087500 , TraesCS6A02G087800 , TraesCS6A02G119700 , TraesCS6A02G119700 , TraesCS2A02G458600 , TraesCSU02G018500 , TraesCS5A02G196700 , TraesCS5B02G080200 , TraesCS4A02G086400 , TraesCS5B02G187200 , TraesCS4D02G218400 , TraesCS7B02G354000 , TraesCS7B02G354000 , TraesCS4B02G218100 , TraesCS6A02G087100 , TraesCS6B02G164700 , TraesCS6B02G164700 , TraesCS2D02G458700 , TraesCS7B02G354200 , TraesCS7B02G354100 , TraesCS6B02G110300 , TraesCS7A02G453600 , TraesCS6A02G112400 , TraesCS6B02G140600 , TraesCS4A02G086300 , TraesCSU02G019400 , TraesCS5A02G073800 , TraesCS6D02G125600 , TraesCS7B02G390800 , TraesCS4D02G218300 , TraesCS2A02G408200 , TraesCS7A02G453400 , TraesCS4B02G218000 , TraesCS2B02G480500 , TraesCS1D02G228700
Populus PNT11513 , PNT04278 , PNT28507 , PNT28506 , PNT13284 , PNT13285 , PNT13286 , PNT13287 , PNT13281 , PNT13282 , PNT13283 , PNT13288 , PNT13289 , PNT13292 , PNT13291 , PNT13290 , PNT56764 , PNT56763


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G058300 expressed protein -
2 Sobic.007G167950 - -
3 Sobic.007G081800 MBTB22 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
4 Sobic.005G087732 - -
5 Sobic.007G110800 expressed protein -
6 Sobic.010G123800 expressed protein -
7 Sobic.004G046700 OsFBLD3 - F-box, LRR and FBD domain containing protein, expressed -
8 Sobic.004G086900 - -
9 Sobic.007G082300 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
10 Sobic.009G060100 alliin lyase precursor, putative, expressed K16903: L-tryptophan---pyruvate aminotransferase
11 Sobic.007G082100 MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
12 Sobic.003G191200 expressed protein -
13 Sobic.001G211700 MBTB33 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
14 Sobic.006G017900 DEFL55 - Defensin and Defensin-like DEFL family, expressed -
15 Sobic.002G182701 - -
16 Sobic.002G384900 expressed protein -
17 Sobic.006G017700 expressed protein -
18 Sobic.005G058200 expressed protein -
19 Sobic.007G031200 - -
20 Sobic.004G100300 plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic006G224400 Sobic006G224400 Sobic005G058300 Sobic005G058300 Sobic006G224400--Sobic005G058300 Sobic007G167950 Sobic007G167950 Sobic006G224400--Sobic007G167950 Sobic007G081800 Sobic007G081800 Sobic006G224400--Sobic007G081800 Sobic005G087732 Sobic005G087732 Sobic006G224400--Sobic005G087732 Sobic007G110800 Sobic007G110800 Sobic006G224400--Sobic007G110800 Sobic010G123800 Sobic010G123800 Sobic006G224400--Sobic010G123800 Sobic004G046700 Sobic004G046700 Sobic006G224400--Sobic004G046700 Sobic004G086900 Sobic004G086900 Sobic006G224400--Sobic004G086900 Sobic007G082300 Sobic007G082300 Sobic006G224400--Sobic007G082300 Sobic005G058300--Sobic007G081800 Sobic005G058300--Sobic010G123800 Sobic005G058300--Sobic004G046700 Sobic005G058300--Sobic007G167950 Sobic005G058300--Sobic005G087732 Sobic005G058300--Sobic006G224400 Sobic005G058300--Sobic007G110800 Sobic009G060100 Sobic009G060100 Sobic005G058300--Sobic009G060100 Sobic005G058300--Sobic004G086900 Sobic007G167950--Sobic005G087732 Sobic007G167950--Sobic007G110800 Sobic007G167950--Sobic004G086900 Sobic007G167950--Sobic007G082300 Sobic007G167950--Sobic005G058300 Sobic007G167950--Sobic006G224400 Sobic007G167950--Sobic007G081800 Sobic007G167950--Sobic010G123800 Sobic007G167950--Sobic004G046700 Sobic007G081800--Sobic005G058300 Sobic007G081800--Sobic010G123800 Sobic007G081800--Sobic004G046700 Sobic007G081800--Sobic006G224400 Sobic007G081800--Sobic007G167950 Sobic007G081800--Sobic005G087732 Sobic007G081800--Sobic007G110800 Sobic007G081800--Sobic009G060100 Sobic006G017900 Sobic006G017900 Sobic007G081800--Sobic006G017900 Sobic005G087732--Sobic007G167950 Sobic005G087732--Sobic007G110800 Sobic005G087732--Sobic004G086900 Sobic005G087732--Sobic007G082300 Sobic005G087732--Sobic005G058300 Sobic005G087732--Sobic006G224400 Sobic005G087732--Sobic007G081800 Sobic005G087732--Sobic010G123800 Sobic005G087732--Sobic004G046700 Sobic007G110800--Sobic005G087732 Sobic007G110800--Sobic007G167950 Sobic007G110800--Sobic004G086900 Sobic007G110800--Sobic007G082300 Sobic007G110800--Sobic005G058300 Sobic007G110800--Sobic006G224400 Sobic007G110800--Sobic007G081800 Sobic007G110800--Sobic010G123800 Sobic007G110800--Sobic004G046700 Sobic010G123800--Sobic004G046700 Sobic010G123800--Sobic007G081800 Sobic010G123800--Sobic005G058300 Sobic010G123800--Sobic006G224400 Sobic010G123800--Sobic007G167950 Sobic010G123800--Sobic005G087732 Sobic010G123800--Sobic006G017900 Sobic001G211700 Sobic001G211700 Sobic010G123800--Sobic001G211700 Sobic007G082100 Sobic007G082100 Sobic010G123800--Sobic007G082100 Sobic004G046700--Sobic010G123800 Sobic004G046700--Sobic007G081800 Sobic004G046700--Sobic005G058300 Sobic004G046700--Sobic006G017900 Sobic004G046700--Sobic001G211700 Sobic004G046700--Sobic006G224400 Sobic004G046700--Sobic007G082100 Sobic003G191200 Sobic003G191200 Sobic004G046700--Sobic003G191200 Sobic004G046700--Sobic007G167950 Sobic004G086900--Sobic007G082300 Sobic004G086900--Sobic005G087732 Sobic004G086900--Sobic007G167950 Sobic004G086900--Sobic007G110800 Sobic004G086900--Sobic006G224400 Sobic004G086900--Sobic005G058300 Sobic005G058200 Sobic005G058200 Sobic004G086900--Sobic005G058200 Sobic004G086900--Sobic007G081800 Sobic004G086900--Sobic010G123800 Sobic007G082300--Sobic004G086900 Sobic007G082300--Sobic005G087732 Sobic007G082300--Sobic007G167950 Sobic007G082300--Sobic007G110800 Sobic007G082300--Sobic005G058200 Sobic007G082300--Sobic006G224400 Sobic007G082300--Sobic005G058300 Sobic005G007200 Sobic005G007200 Sobic007G082300--Sobic005G007200 Sobic007G082300--Sobic007G081800
Octagon: transcription factors


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