Gene annotation
| Transcriptome id |
Sobic.009G168700.1 |
|---|
| Synonym |
1, AMT2, ATAMT2, Sb09g023030 |
|---|
| Functional annotation |
ammonium transporter protein, putative, expressed |
|---|
| UniProt |
C5YZE2 |
|---|
| Pfam |
PF00909 |
|---|
| Panther DB |
PTHR11730
PTHR11730:SF45 |
|---|
| NCBI CDD |
KOG0682; Ammonia permease |
|---|
| KEGG Orthology |
K03320; amt, AMT, ammonium transporter, Amt family |
|---|
| Gene Ontology |
GO:0016020; membrane
GO:0015696ammonium transport
GO:0008519ammonium transmembrane transporter activity |
|---|
Orthologs (automatic annotation)
| TAIR |
AT2G38290 : ammonium transporter 2 |
|---|
| RAP-DB (Rice) |
LOC_Os05g39240.1 : ammonium transporter protein, putative, expressed |
|---|
| MaizeGDB (Corn) |
Zm00025a020615
, Zm00025a016807
, Zm00025a043934
, Zm00025a039553
, Zm00025a008959 |
|---|
| Brachypodium |
KQK05814
, KQK13209
, KQK10804
, KQK10805
, KQK12242
, KQJ99831 |
|---|
| Barley |
HORVU3Hr1G082540.2
, HORVU3Hr1G082540.1
, HORVU3Hr1G087690.2
, HORVU5Hr1G095030.1
, HORVU5Hr1G095030.2
, HORVU3Hr1G087690.1
, HORVU5Hr1G118590.9
, HORVU5Hr1G118590.8
, HORVU5Hr1G118590.7
, HORVU5Hr1G118590.6
, HORVU5Hr1G118590.2
, HORVU5Hr1G118590.1
, HORVU0Hr1G014360.2
, HORVU0Hr1G014360.3
, HORVU0Hr1G014360.1
, HORVU3Hr1G082610.2
, HORVU3Hr1G082610.1
, HORVU1Hr1G070730.8
, HORVU1Hr1G070730.6
, HORVU1Hr1G070730.7
, HORVU1Hr1G070730.4
, HORVU1Hr1G070730.5
, HORVU1Hr1G070730.2
, HORVU1Hr1G070730.3
, HORVU1Hr1G070730.1 |
|---|
| Wheat |
TraesCS3A02G350800
, TraesCS3D02G344800
, TraesCS5D02G519400
, TraesCS5D02G519400
, TraesCS5B02G520200
, TraesCS1D02G296600
, TraesCS3B02G383400
, TraesCS4A02G352900
, TraesCS1A02G295300 |
|---|
| Populus |
- |
|---|
JBrowse
Expression pattern by RNA-Seq analysis
| FPKM plot |
 |
Find similar expressed genes
| Top 20 genes with similar expressed profiles |
 |
| Rank |
Gene |
Function |
KEGG orthology |
|---|
| 1 |
Sobic.001G084200 |
UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed |
- |
| 2 |
Sobic.002G302400 |
SAM dependent carboxyl methyltransferase, putative, expressed |
- |
| 3 |
Sobic.008G192100 |
Up-reguralion under drought(PubMedID : 24916767)@Up-reguralion under combine stress of drought and heat(PubMedID : 24916767)@expressed protein |
- |
| 4 |
Sobic.005G082950 |
- |
- |
| 5 |
Sobic.010G021600 |
- |
- |
| 6 |
Sobic.008G032850 |
- |
- |
| 7 |
Sobic.004G048600 |
coiled-coil domain-containing protein 72, putative, expressed |
- |
| 8 |
Sobic.004G067850 |
- |
- |
| 9 |
Sobic.K042700 |
OsMADS70 - MADS-box family gene with M-alpha type-box, expressed |
- |
| 10 |
Sobic.007G100275 |
- |
- |
| 11 |
Sobic.001G272300 |
OsFBX356 - F-box domain containing protein, expressed |
- |
| 12 |
Sobic.001G272300 |
OsFBX356 - F-box domain containing protein, expressed |
- |
| 13 |
Sobic.001G272300 |
OsFBX356 - F-box domain containing protein, expressed |
- |
| 14 |
Sobic.001G272300 |
OsFBX356 - F-box domain containing protein, expressed |
- |
| 15 |
Sobic.001G272300 |
OsFBX356 - F-box domain containing protein, expressed |
- |
| 16 |
Sobic.001G272300 |
OsFBX356 - F-box domain containing protein, expressed |
- |
| 17 |
Sobic.001G272300 |
OsFBX356 - F-box domain containing protein, expressed |
- |
| 18 |
Sobic.001G272300 |
OsFBX356 - F-box domain containing protein, expressed |
- |
| 19 |
Sobic.001G272300 |
OsFBX356 - F-box domain containing protein, expressed |
- |
| 20 |
Sobic.001G272300 |
OsFBX356 - F-box domain containing protein, expressed |
- |
Gene co-expression network
|
|
Octagon: transcription factors
