Hb_000009_330

Information

Type transcription factor
Description TF Family: LIM
Location Contig9: 313661-319809
Sequence    

Annotation

kegg
ID rcu:RCOM_0411700
description zinc ion binding protein, putative
nr
ID XP_002533282.1
description zinc ion binding protein, putative [Ricinus communis]
swissprot
ID Q8W4F0
description Protein DA1-related 1 OS=Arabidopsis thaliana GN=DAR1 PE=1 SV=3
trembl
ID B9T4W3
description Zinc ion binding protein, putative OS=Ricinus communis GN=RCOM_0411700 PE=4 SV=1
Gene Ontology
ID GO:0008270
description protein da1-related 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61874: 313406-314637 , PASA_asmbl_61875: 313502-314687 , PASA_asmbl_61876: 314688-316464 , PASA_asmbl_61877: 316690-317879
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000009_330 0.0 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
2 Hb_000059_020 0.07758078 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
3 Hb_004994_090 0.0785348109 - - PREDICTED: uncharacterized protein LOC105643033 isoform X2 [Jatropha curcas]
4 Hb_000169_170 0.0820062374 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
5 Hb_000862_040 0.0909276884 - - ara4-interacting protein, putative [Ricinus communis]
6 Hb_000236_410 0.0923693683 - - Paramyosin, putative [Ricinus communis]
7 Hb_007054_040 0.0937522016 - - PREDICTED: protein RST1 [Jatropha curcas]
8 Hb_001055_030 0.0939782356 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
9 Hb_000631_120 0.095199797 - - hypothetical protein CISIN_1g0431902mg, partial [Citrus sinensis]
10 Hb_000940_200 0.0954337448 - - PREDICTED: uncharacterized protein LOC105643779 [Jatropha curcas]
11 Hb_032808_030 0.0981094784 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
12 Hb_001935_140 0.0981864825 - - CCR4-NOT transcription complex subunit 1 [Gossypium arboreum]
13 Hb_000856_180 0.1050596285 - - calcium-dependent protein kinase [Hevea brasiliensis]
14 Hb_004586_290 0.1077226741 - - PREDICTED: transport inhibitor response 1-like protein [Jatropha curcas]
15 Hb_000105_040 0.1085396571 - - PREDICTED: serine/threonine-protein kinase TOR isoform X2 [Jatropha curcas]
16 Hb_001541_250 0.1089740395 - - PREDICTED: integrator complex subunit 9 homolog isoform X1 [Jatropha curcas]
17 Hb_083799_010 0.1108885875 - - ubiquitin-protein ligase, putative [Ricinus communis]
18 Hb_003849_240 0.1110385307 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
19 Hb_001105_160 0.1115250775 - - PREDICTED: protein phosphatase 2C 32 [Jatropha curcas]
20 Hb_003071_020 0.1123630618 transcription factor TF Family: ARF Auxin response factor [Medicago truncatula]

Gene co-expression network

sample Hb_000009_330 Hb_000009_330 Hb_000059_020 Hb_000059_020 Hb_000009_330--Hb_000059_020 Hb_004994_090 Hb_004994_090 Hb_000009_330--Hb_004994_090 Hb_000169_170 Hb_000169_170 Hb_000009_330--Hb_000169_170 Hb_000862_040 Hb_000862_040 Hb_000009_330--Hb_000862_040 Hb_000236_410 Hb_000236_410 Hb_000009_330--Hb_000236_410 Hb_007054_040 Hb_007054_040 Hb_000009_330--Hb_007054_040 Hb_000059_020--Hb_000862_040 Hb_000940_200 Hb_000940_200 Hb_000059_020--Hb_000940_200 Hb_005568_040 Hb_005568_040 Hb_000059_020--Hb_005568_040 Hb_000700_060 Hb_000700_060 Hb_000059_020--Hb_000700_060 Hb_000197_030 Hb_000197_030 Hb_000059_020--Hb_000197_030 Hb_004994_090--Hb_000059_020 Hb_001935_140 Hb_001935_140 Hb_004994_090--Hb_001935_140 Hb_000302_200 Hb_000302_200 Hb_004994_090--Hb_000302_200 Hb_000406_110 Hb_000406_110 Hb_004994_090--Hb_000406_110 Hb_008948_140 Hb_008948_140 Hb_004994_090--Hb_008948_140 Hb_000169_170--Hb_007054_040 Hb_001541_250 Hb_001541_250 Hb_000169_170--Hb_001541_250 Hb_127599_010 Hb_127599_010 Hb_000169_170--Hb_127599_010 Hb_000169_170--Hb_000862_040 Hb_001862_110 Hb_001862_110 Hb_000169_170--Hb_001862_110 Hb_000862_040--Hb_000940_200 Hb_005542_140 Hb_005542_140 Hb_000862_040--Hb_005542_140 Hb_000862_040--Hb_001935_140 Hb_000862_040--Hb_005568_040 Hb_002325_040 Hb_002325_040 Hb_000862_040--Hb_002325_040 Hb_032808_030 Hb_032808_030 Hb_000236_410--Hb_032808_030 Hb_144744_010 Hb_144744_010 Hb_000236_410--Hb_144744_010 Hb_093084_070 Hb_093084_070 Hb_000236_410--Hb_093084_070 Hb_010712_090 Hb_010712_090 Hb_000236_410--Hb_010712_090 Hb_001055_030 Hb_001055_030 Hb_000236_410--Hb_001055_030 Hb_000236_410--Hb_001935_140 Hb_007054_040--Hb_001541_250 Hb_007054_040--Hb_001862_110 Hb_000373_100 Hb_000373_100 Hb_007054_040--Hb_000373_100 Hb_007054_040--Hb_001935_140 Hb_005389_160 Hb_005389_160 Hb_007054_040--Hb_005389_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5608 54.4407 15.9885 29.1117 22.0002 18.4594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.2041 15.0414 12.4197 40.0931 11.2855

CAGE analysis