Hb_000172_120

Information

Type -
Description -
Location Contig172: 172353-177643
Sequence    

Annotation

kegg
ID rcu:RCOM_0662400
description hypothetical protein
nr
ID XP_012093113.1
description PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LPP3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24074 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16127: 172613-177219 , PASA_asmbl_16128: 173788-174098 , PASA_asmbl_16129: 177369-177921
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_120 0.0 - - PREDICTED: uncharacterized protein LOC105650770 isoform X1 [Jatropha curcas]
2 Hb_007441_340 0.0377265606 - - protein with unknown function [Ricinus communis]
3 Hb_004096_170 0.065247349 - - PREDICTED: uncharacterized protein DDB_G0275933 [Jatropha curcas]
4 Hb_003453_020 0.0760346914 - - PREDICTED: histidine biosynthesis bifunctional protein hisIE, chloroplastic [Jatropha curcas]
5 Hb_001269_150 0.0803729884 - - PREDICTED: DCN1-like protein 4 [Jatropha curcas]
6 Hb_002400_220 0.0870029871 - - Vesicle-associated membrane protein, putative [Ricinus communis]
7 Hb_002377_040 0.0885283063 - - serine/threonine protein kinase, putative [Ricinus communis]
8 Hb_004813_010 0.0928655261 - - nucleic acid binding protein, putative [Ricinus communis]
9 Hb_004502_030 0.0929386186 - - unknown [Populus trichocarpa]
10 Hb_002044_090 0.0933046619 - - PREDICTED: uncharacterized protein LOC105643541 isoform X1 [Jatropha curcas]
11 Hb_000176_110 0.0950166058 - - PREDICTED: serine--tRNA ligase [Jatropha curcas]
12 Hb_003352_050 0.0955265971 - - PREDICTED: uncharacterized protein LOC105643709 [Jatropha curcas]
13 Hb_004108_020 0.0962100814 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Populus euphratica]
14 Hb_000847_070 0.0974669813 - - PREDICTED: uncharacterized protein LOC105125699 [Populus euphratica]
15 Hb_000768_030 0.0983315195 - - PREDICTED: ELMO domain-containing protein A isoform X1 [Jatropha curcas]
16 Hb_003688_100 0.0988013366 - - Uncharacterized protein TCM_002515 [Theobroma cacao]
17 Hb_002942_070 0.0992288666 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
18 Hb_000062_230 0.1000648768 - - PREDICTED: probable thimet oligopeptidase isoform X1 [Jatropha curcas]
19 Hb_000905_190 0.1000965691 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
20 Hb_000538_020 0.1009494856 - - PREDICTED: autophagy protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_000172_120 Hb_000172_120 Hb_007441_340 Hb_007441_340 Hb_000172_120--Hb_007441_340 Hb_004096_170 Hb_004096_170 Hb_000172_120--Hb_004096_170 Hb_003453_020 Hb_003453_020 Hb_000172_120--Hb_003453_020 Hb_001269_150 Hb_001269_150 Hb_000172_120--Hb_001269_150 Hb_002400_220 Hb_002400_220 Hb_000172_120--Hb_002400_220 Hb_002377_040 Hb_002377_040 Hb_000172_120--Hb_002377_040 Hb_007441_340--Hb_004096_170 Hb_007441_340--Hb_003453_020 Hb_007441_340--Hb_002400_220 Hb_007441_340--Hb_001269_150 Hb_000258_410 Hb_000258_410 Hb_007441_340--Hb_000258_410 Hb_000847_070 Hb_000847_070 Hb_004096_170--Hb_000847_070 Hb_004096_170--Hb_003453_020 Hb_002044_090 Hb_002044_090 Hb_004096_170--Hb_002044_090 Hb_004813_010 Hb_004813_010 Hb_004096_170--Hb_004813_010 Hb_000322_050 Hb_000322_050 Hb_003453_020--Hb_000322_050 Hb_000176_110 Hb_000176_110 Hb_003453_020--Hb_000176_110 Hb_005527_050 Hb_005527_050 Hb_003453_020--Hb_005527_050 Hb_000012_090 Hb_000012_090 Hb_003453_020--Hb_000012_090 Hb_012305_070 Hb_012305_070 Hb_003453_020--Hb_012305_070 Hb_001493_100 Hb_001493_100 Hb_001269_150--Hb_001493_100 Hb_001269_150--Hb_002400_220 Hb_000732_260 Hb_000732_260 Hb_001269_150--Hb_000732_260 Hb_001269_150--Hb_004813_010 Hb_159558_030 Hb_159558_030 Hb_002400_220--Hb_159558_030 Hb_000500_130 Hb_000500_130 Hb_002400_220--Hb_000500_130 Hb_033491_010 Hb_033491_010 Hb_002400_220--Hb_033491_010 Hb_000359_170 Hb_000359_170 Hb_002400_220--Hb_000359_170 Hb_000062_230 Hb_000062_230 Hb_002377_040--Hb_000062_230 Hb_005754_020 Hb_005754_020 Hb_002377_040--Hb_005754_020 Hb_002377_040--Hb_002044_090 Hb_003352_050 Hb_003352_050 Hb_002377_040--Hb_003352_050 Hb_000028_470 Hb_000028_470 Hb_002377_040--Hb_000028_470 Hb_000085_340 Hb_000085_340 Hb_002377_040--Hb_000085_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.0392 2.74224 5.21062 3.91354 23.3544 19.8646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.8071 11.9582 8.80243 3.47711 1.26496

CAGE analysis