Hb_000179_180

Information

Type -
Description -
Location Contig179: 185815-186230
Sequence    

Annotation

kegg
ID mtr:MTR_1g015260
description PHD finger/nucleic acid binding protein
nr
ID KCW81786.1
description hypothetical protein EUGRSUZ_C031461, partial [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059CUB7
description Uncharacterized protein (Fragment) OS=Eucalyptus grandis GN=EUGRSUZ_C031461 PE=4 SV=1
Gene Ontology
ID GO:0042393
description phd finger family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17287: 185637-187346 , PASA_asmbl_17288: 185793-189967
cDNA
(Sanger)
(ID:Location)		 020_F17.ab1: 185637-186511

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000179_180 0.0 - - hypothetical protein EUGRSUZ_C031461, partial [Eucalyptus grandis]
2 Hb_011932_010 0.1268311752 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
3 Hb_000059_200 0.1424423537 - - PREDICTED: WEB family protein At2g38370-like [Jatropha curcas]
4 Hb_118720_010 0.1494271685 - - PREDICTED: uncharacterized protein LOC105634948 [Jatropha curcas]
5 Hb_000152_640 0.1499593676 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
6 Hb_009393_200 0.1562532017 - - PREDICTED: F-box only protein 13 [Jatropha curcas]
7 Hb_001484_100 0.1586281236 - - PREDICTED: cyanate hydratase [Jatropha curcas]
8 Hb_040747_010 0.1589498314 - - hypothetical protein POPTR_0009s15120g [Populus trichocarpa]
9 Hb_000589_060 0.1599240163 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_00699 [Jatropha curcas]
10 Hb_005656_080 0.1608178483 - - PREDICTED: RNA-binding KH domain-containing protein PEPPER-like [Jatropha curcas]
11 Hb_000122_010 0.1658195341 - - amino acid transporter, putative [Ricinus communis]
12 Hb_073171_090 0.1659357191 - - PREDICTED: uncharacterized protein LOC105631539 [Jatropha curcas]
13 Hb_005054_310 0.170583718 - - PREDICTED: glycosyltransferase family 64 protein C4 [Jatropha curcas]
14 Hb_000834_240 0.1707077286 - - hypothetical protein JCGZ_07230 [Jatropha curcas]
15 Hb_000836_370 0.1746728384 - - PREDICTED: protein REVEILLE 3-like isoform X1 [Jatropha curcas]
16 Hb_145317_010 0.1789381333 - - PREDICTED: transmembrane 9 superfamily member 11 [Jatropha curcas]
17 Hb_182249_010 0.179805722 - - -
18 Hb_170674_010 0.180113528 - - hypothetical protein JCGZ_23765 [Jatropha curcas]
19 Hb_096819_010 0.1814579843 - - PREDICTED: GRIP and coiled-coil domain-containing protein 2 isoform X4 [Jatropha curcas]
20 Hb_000046_080 0.1818408605 - - PREDICTED: serine/arginine-rich SC35-like splicing factor SCL28 [Jatropha curcas]

Gene co-expression network

sample Hb_000179_180 Hb_000179_180 Hb_011932_010 Hb_011932_010 Hb_000179_180--Hb_011932_010 Hb_000059_200 Hb_000059_200 Hb_000179_180--Hb_000059_200 Hb_118720_010 Hb_118720_010 Hb_000179_180--Hb_118720_010 Hb_000152_640 Hb_000152_640 Hb_000179_180--Hb_000152_640 Hb_009393_200 Hb_009393_200 Hb_000179_180--Hb_009393_200 Hb_001484_100 Hb_001484_100 Hb_000179_180--Hb_001484_100 Hb_016006_010 Hb_016006_010 Hb_011932_010--Hb_016006_010 Hb_000589_060 Hb_000589_060 Hb_011932_010--Hb_000589_060 Hb_011932_010--Hb_001484_100 Hb_005656_080 Hb_005656_080 Hb_011932_010--Hb_005656_080 Hb_000205_130 Hb_000205_130 Hb_011932_010--Hb_000205_130 Hb_073171_090 Hb_073171_090 Hb_000059_200--Hb_073171_090 Hb_002081_120 Hb_002081_120 Hb_000059_200--Hb_002081_120 Hb_096819_010 Hb_096819_010 Hb_000059_200--Hb_096819_010 Hb_000958_150 Hb_000958_150 Hb_000059_200--Hb_000958_150 Hb_003470_030 Hb_003470_030 Hb_000059_200--Hb_003470_030 Hb_000059_200--Hb_000205_130 Hb_002783_010 Hb_002783_010 Hb_118720_010--Hb_002783_010 Hb_002742_080 Hb_002742_080 Hb_118720_010--Hb_002742_080 Hb_116638_010 Hb_116638_010 Hb_118720_010--Hb_116638_010 Hb_118720_010--Hb_000059_200 Hb_001493_080 Hb_001493_080 Hb_118720_010--Hb_001493_080 Hb_000120_520 Hb_000120_520 Hb_000152_640--Hb_000120_520 Hb_005054_310 Hb_005054_310 Hb_000152_640--Hb_005054_310 Hb_000056_300 Hb_000056_300 Hb_000152_640--Hb_000056_300 Hb_005203_020 Hb_005203_020 Hb_000152_640--Hb_005203_020 Hb_167381_020 Hb_167381_020 Hb_000152_640--Hb_167381_020 Hb_000836_370 Hb_000836_370 Hb_000152_640--Hb_000836_370 Hb_000122_010 Hb_000122_010 Hb_009393_200--Hb_000122_010 Hb_009222_070 Hb_009222_070 Hb_009393_200--Hb_009222_070 Hb_010053_040 Hb_010053_040 Hb_009393_200--Hb_010053_040 Hb_008511_060 Hb_008511_060 Hb_009393_200--Hb_008511_060 Hb_004374_130 Hb_004374_130 Hb_009393_200--Hb_004374_130 Hb_000637_140 Hb_000637_140 Hb_009393_200--Hb_000637_140 Hb_001484_100--Hb_005054_310 Hb_001484_100--Hb_000836_370 Hb_085364_010 Hb_085364_010 Hb_001484_100--Hb_085364_010 Hb_003078_030 Hb_003078_030 Hb_001484_100--Hb_003078_030 Hb_005649_090 Hb_005649_090 Hb_001484_100--Hb_005649_090 Hb_030545_030 Hb_030545_030 Hb_001484_100--Hb_030545_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.0053 61.7976 47.6351 46.0018 24.3239 53.1169
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.8621 4.89176 4.57433 10.5399 4.38898

CAGE analysis