Hb_000340_440

Information

Type -
Description -
Location Contig340: 369715-372617
Sequence    

Annotation

kegg
ID pop:POPTR_0002s22840g
description POPTRDRAFT_552633; hypothetical protein
nr
ID XP_012092333.1
description PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
swissprot
ID Q9LYC1
description Gibberellin receptor GID1B OS=Arabidopsis thaliana GN=GID1B PE=1 SV=1
trembl
ID A0A067JFG9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_22004 PE=4 SV=1
Gene Ontology
ID GO:0005622
description gibberellin receptor gid1b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35585: 369752-372438
cDNA
(Sanger)
(ID:Location)		 033_G05.ab1: 371024-372438

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000340_440 0.0 - - PREDICTED: gibberellin receptor GID1B [Jatropha curcas]
2 Hb_002784_140 0.1385918531 - - glutamate receptor 2 plant, putative [Ricinus communis]
3 Hb_000316_100 0.1453595043 - - protein with unknown function [Ricinus communis]
4 Hb_000094_110 0.1554104263 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000175_130 0.1645264923 - - PREDICTED: PTI1-like tyrosine-protein kinase At3g15890 [Jatropha curcas]
6 Hb_006132_050 0.1680125674 - - hypothetical protein EUTSA_v10028860mg [Eutrema salsugineum]
7 Hb_148850_010 0.1717613952 - - PREDICTED: potassium transporter 5-like [Jatropha curcas]
8 Hb_058143_010 0.1732224011 - - hypothetical protein JCGZ_01992 [Jatropha curcas]
9 Hb_002045_230 0.1736452423 - - Ammonium transporter 2 [Theobroma cacao]
10 Hb_027892_040 0.1763269299 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
11 Hb_000258_280 0.1791775618 - - PREDICTED: probable ran guanine nucleotide release factor [Jatropha curcas]
12 Hb_000106_090 0.1801341189 - - PREDICTED: uncharacterized protein LOC105634795 [Jatropha curcas]
13 Hb_001052_030 0.1889771156 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
14 Hb_002326_180 0.1890065083 - - Protein Z, putative [Ricinus communis]
15 Hb_002105_030 0.1908031401 - - -
16 Hb_002344_070 0.1915383402 - - PREDICTED: proteasome subunit alpha type-6 [Jatropha curcas]
17 Hb_000563_310 0.1935069086 transcription factor TF Family: ERF ethylene-responsive transcription factor 3 [Hevea brasiliensis]
18 Hb_000352_180 0.1937139319 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000078_020 0.1949653849 - - -
20 Hb_004414_040 0.1958400853 transcription factor TF Family: ERF AP2 domain-containing transcription factor family protein [Populus trichocarpa]

Gene co-expression network

sample Hb_000340_440 Hb_000340_440 Hb_002784_140 Hb_002784_140 Hb_000340_440--Hb_002784_140 Hb_000316_100 Hb_000316_100 Hb_000340_440--Hb_000316_100 Hb_000094_110 Hb_000094_110 Hb_000340_440--Hb_000094_110 Hb_000175_130 Hb_000175_130 Hb_000340_440--Hb_000175_130 Hb_006132_050 Hb_006132_050 Hb_000340_440--Hb_006132_050 Hb_148850_010 Hb_148850_010 Hb_000340_440--Hb_148850_010 Hb_004414_040 Hb_004414_040 Hb_002784_140--Hb_004414_040 Hb_000563_310 Hb_000563_310 Hb_002784_140--Hb_000563_310 Hb_002784_140--Hb_006132_050 Hb_001277_080 Hb_001277_080 Hb_002784_140--Hb_001277_080 Hb_002784_140--Hb_000316_100 Hb_000316_100--Hb_000175_130 Hb_010172_100 Hb_010172_100 Hb_000316_100--Hb_010172_100 Hb_001842_080 Hb_001842_080 Hb_000316_100--Hb_001842_080 Hb_006351_110 Hb_006351_110 Hb_000316_100--Hb_006351_110 Hb_005908_040 Hb_005908_040 Hb_000316_100--Hb_005908_040 Hb_027892_040 Hb_027892_040 Hb_000316_100--Hb_027892_040 Hb_001052_030 Hb_001052_030 Hb_000094_110--Hb_001052_030 Hb_003847_020 Hb_003847_020 Hb_000094_110--Hb_003847_020 Hb_000094_110--Hb_000175_130 Hb_146225_010 Hb_146225_010 Hb_000094_110--Hb_146225_010 Hb_001386_050 Hb_001386_050 Hb_000094_110--Hb_001386_050 Hb_002918_140 Hb_002918_140 Hb_000094_110--Hb_002918_140 Hb_000853_240 Hb_000853_240 Hb_000175_130--Hb_000853_240 Hb_002045_230 Hb_002045_230 Hb_000175_130--Hb_002045_230 Hb_002326_180 Hb_002326_180 Hb_000175_130--Hb_002326_180 Hb_000175_130--Hb_001052_030 Hb_000696_220 Hb_000696_220 Hb_000175_130--Hb_000696_220 Hb_000853_360 Hb_000853_360 Hb_006132_050--Hb_000853_360 Hb_000106_090 Hb_000106_090 Hb_006132_050--Hb_000106_090 Hb_006132_050--Hb_002326_180 Hb_000617_050 Hb_000617_050 Hb_006132_050--Hb_000617_050 Hb_000777_060 Hb_000777_060 Hb_006132_050--Hb_000777_060 Hb_001616_020 Hb_001616_020 Hb_006132_050--Hb_001616_020 Hb_058143_010 Hb_058143_010 Hb_148850_010--Hb_058143_010 Hb_148850_010--Hb_000094_110 Hb_004942_020 Hb_004942_020 Hb_148850_010--Hb_004942_020 Hb_113906_010 Hb_113906_010 Hb_148850_010--Hb_113906_010 Hb_003992_080 Hb_003992_080 Hb_148850_010--Hb_003992_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
126.612 23.4684 12.6313 14.2491 49.024 63.6944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
84.9202 772.94 196.044 30.8963 11.7436

CAGE analysis