Hb_002118_040

Information

Type -
Description -
Location Contig2118: 47305-51292
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_010445339.1
description PREDICTED: uncharacterized protein LOC104727990 [Camelina sativa]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002118_040 0.0 - - PREDICTED: uncharacterized protein LOC104727990 [Camelina sativa]
2 Hb_001190_090 0.1994944639 - - PREDICTED: uncharacterized protein LOC105638813 [Jatropha curcas]
3 Hb_000042_190 0.3213221213 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000733_130 0.321652349 - - PREDICTED: cucumisin [Vitis vinifera]
5 Hb_103604_010 0.3227075658 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
6 Hb_006586_010 0.3263188871 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_052983_010 0.3276998504 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_006938_070 0.3316380409 - - PREDICTED: uncharacterized protein LOC104893877 [Beta vulgaris subsp. vulgaris]
9 Hb_132303_010 0.3354746887 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_091367_010 0.3410875487 - - hypothetical protein JCGZ_18029 [Jatropha curcas]
11 Hb_000249_120 0.3424146681 - - PREDICTED: uncharacterized protein LOC104613364 [Nelumbo nucifera]
12 Hb_165666_010 0.3428662121 - - -
13 Hb_001318_090 0.3457028497 - - PREDICTED: zinc finger protein 598 [Jatropha curcas]
14 Hb_012725_080 0.3457539202 - - -
15 Hb_005396_160 0.3476284098 - - PREDICTED: clavaminate synthase-like protein At3g21360 [Jatropha curcas]
16 Hb_004757_030 0.3507197477 - - -
17 Hb_005078_030 0.3509587092 - - -
18 Hb_004225_150 0.3514600114 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
19 Hb_001799_080 0.3569481577 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
20 Hb_002357_050 0.3583414881 - - -

Gene co-expression network

sample Hb_002118_040 Hb_002118_040 Hb_001190_090 Hb_001190_090 Hb_002118_040--Hb_001190_090 Hb_000042_190 Hb_000042_190 Hb_002118_040--Hb_000042_190 Hb_000733_130 Hb_000733_130 Hb_002118_040--Hb_000733_130 Hb_103604_010 Hb_103604_010 Hb_002118_040--Hb_103604_010 Hb_006586_010 Hb_006586_010 Hb_002118_040--Hb_006586_010 Hb_052983_010 Hb_052983_010 Hb_002118_040--Hb_052983_010 Hb_004757_030 Hb_004757_030 Hb_001190_090--Hb_004757_030 Hb_005078_030 Hb_005078_030 Hb_001190_090--Hb_005078_030 Hb_002357_050 Hb_002357_050 Hb_001190_090--Hb_002357_050 Hb_006938_070 Hb_006938_070 Hb_001190_090--Hb_006938_070 Hb_001318_090 Hb_001318_090 Hb_001190_090--Hb_001318_090 Hb_000042_190--Hb_052983_010 Hb_001930_020 Hb_001930_020 Hb_000042_190--Hb_001930_020 Hb_000042_190--Hb_002357_050 Hb_005357_090 Hb_005357_090 Hb_000042_190--Hb_005357_090 Hb_124518_010 Hb_124518_010 Hb_000042_190--Hb_124518_010 Hb_000042_190--Hb_005078_030 Hb_000043_070 Hb_000043_070 Hb_000733_130--Hb_000043_070 Hb_011063_020 Hb_011063_020 Hb_000733_130--Hb_011063_020 Hb_000160_030 Hb_000160_030 Hb_000733_130--Hb_000160_030 Hb_004460_010 Hb_004460_010 Hb_000733_130--Hb_004460_010 Hb_026048_020 Hb_026048_020 Hb_000733_130--Hb_026048_020 Hb_012338_020 Hb_012338_020 Hb_103604_010--Hb_012338_020 Hb_103604_010--Hb_001190_090 Hb_007547_020 Hb_007547_020 Hb_103604_010--Hb_007547_020 Hb_001391_140 Hb_001391_140 Hb_103604_010--Hb_001391_140 Hb_000453_110 Hb_000453_110 Hb_103604_010--Hb_000453_110 Hb_000368_080 Hb_000368_080 Hb_006586_010--Hb_000368_080 Hb_001966_010 Hb_001966_010 Hb_006586_010--Hb_001966_010 Hb_007757_140 Hb_007757_140 Hb_006586_010--Hb_007757_140 Hb_004195_250 Hb_004195_250 Hb_006586_010--Hb_004195_250 Hb_006586_010--Hb_001190_090 Hb_005396_160 Hb_005396_160 Hb_052983_010--Hb_005396_160 Hb_012725_080 Hb_012725_080 Hb_052983_010--Hb_012725_080 Hb_052983_010--Hb_001318_090 Hb_052983_010--Hb_004757_030 Hb_052983_010--Hb_005078_030 Hb_042211_010 Hb_042211_010 Hb_052983_010--Hb_042211_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0744517 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0535972 0.193768 0.0216998 0

CAGE analysis