Hb_002918_290

Information

Type -
Description -
Location Contig2918: 241828-245478
Sequence    

Annotation

kegg
ID pop:POPTR_0004s04810g
description POPTRDRAFT_758857; hypothetical protein
nr
ID XP_012091663.1
description PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JB62
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21478 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30626: 241880-244856 , PASA_asmbl_30627: 245470-245586
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_290 0.0 - - PREDICTED: uncharacterized protein LOC105649583 isoform X1 [Jatropha curcas]
2 Hb_068056_030 0.0663047553 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
3 Hb_001284_030 0.0788736335 - - Coiled-coil domain-containing protein, putative [Ricinus communis]
4 Hb_000042_200 0.0789502756 - - PREDICTED: uncharacterized protein LOC100252136 isoform X1 [Vitis vinifera]
5 Hb_000224_140 0.0790521626 - - ribonuclease z, chloroplast, putative [Ricinus communis]
6 Hb_033153_060 0.0796725855 - - Transcription elongation factor, putative [Ricinus communis]
7 Hb_004459_040 0.0839480391 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
8 Hb_001953_090 0.0841949748 - - PREDICTED: membrane-anchored ubiquitin-fold protein 3 [Jatropha curcas]
9 Hb_003349_080 0.0857195289 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
10 Hb_027073_050 0.0883674655 - - PREDICTED: uncharacterized protein LOC105635813 isoform X2 [Jatropha curcas]
11 Hb_017413_010 0.0893005497 - - -
12 Hb_005463_140 0.0898563329 - - PREDICTED: histone deacetylase complex subunit SAP18 [Jatropha curcas]
13 Hb_002110_200 0.0917469096 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial isoform X1 [Jatropha curcas]
14 Hb_000789_230 0.0929951448 - - PREDICTED: AP-4 complex subunit sigma [Jatropha curcas]
15 Hb_000318_160 0.0942667932 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
16 Hb_001461_010 0.0950144689 - - PREDICTED: trafficking protein particle complex subunit 5 [Pyrus x bretschneideri]
17 Hb_006831_120 0.0956878478 - - PREDICTED: uncharacterized protein LOC105642121 isoform X1 [Jatropha curcas]
18 Hb_001512_080 0.0962994024 - - PREDICTED: proteasome subunit beta type-7-B [Jatropha curcas]
19 Hb_000254_050 0.0970962939 - - hypothetical protein VITISV_010510 [Vitis vinifera]
20 Hb_161175_010 0.0972711843 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]

Gene co-expression network

sample Hb_002918_290 Hb_002918_290 Hb_068056_030 Hb_068056_030 Hb_002918_290--Hb_068056_030 Hb_001284_030 Hb_001284_030 Hb_002918_290--Hb_001284_030 Hb_000042_200 Hb_000042_200 Hb_002918_290--Hb_000042_200 Hb_000224_140 Hb_000224_140 Hb_002918_290--Hb_000224_140 Hb_033153_060 Hb_033153_060 Hb_002918_290--Hb_033153_060 Hb_004459_040 Hb_004459_040 Hb_002918_290--Hb_004459_040 Hb_068056_030--Hb_000224_140 Hb_006569_100 Hb_006569_100 Hb_068056_030--Hb_006569_100 Hb_001512_080 Hb_001512_080 Hb_068056_030--Hb_001512_080 Hb_005463_140 Hb_005463_140 Hb_068056_030--Hb_005463_140 Hb_000417_260 Hb_000417_260 Hb_068056_030--Hb_000417_260 Hb_000046_350 Hb_000046_350 Hb_001284_030--Hb_000046_350 Hb_001284_030--Hb_000042_200 Hb_001284_030--Hb_033153_060 Hb_001284_030--Hb_068056_030 Hb_161175_010 Hb_161175_010 Hb_001284_030--Hb_161175_010 Hb_000042_200--Hb_033153_060 Hb_001953_090 Hb_001953_090 Hb_000042_200--Hb_001953_090 Hb_000042_200--Hb_005463_140 Hb_000042_200--Hb_004459_040 Hb_000224_140--Hb_001512_080 Hb_001076_020 Hb_001076_020 Hb_000224_140--Hb_001076_020 Hb_003349_080 Hb_003349_080 Hb_000224_140--Hb_003349_080 Hb_000318_160 Hb_000318_160 Hb_000224_140--Hb_000318_160 Hb_000224_140--Hb_005463_140 Hb_033153_060--Hb_004459_040 Hb_006541_010 Hb_006541_010 Hb_033153_060--Hb_006541_010 Hb_007576_170 Hb_007576_170 Hb_033153_060--Hb_007576_170 Hb_007065_010 Hb_007065_010 Hb_033153_060--Hb_007065_010 Hb_000789_230 Hb_000789_230 Hb_033153_060--Hb_000789_230 Hb_004459_040--Hb_007576_170 Hb_000680_140 Hb_000680_140 Hb_004459_040--Hb_000680_140 Hb_004459_040--Hb_006541_010 Hb_002687_170 Hb_002687_170 Hb_004459_040--Hb_002687_170 Hb_004459_040--Hb_000224_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.45072 4.57361 8.3219 16.831 9.43053 10.8069
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.0336 36.5095 24.8858 7.19728 14.3444

CAGE analysis