Hb_002928_090

Information

Type -
Description -
Location Contig2928: 74026-78542
Sequence    

Annotation

kegg
ID rcu:RCOM_1600900
description Carboxypeptidase B2 precursor, putative
nr
ID XP_012073667.1
description PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
swissprot
ID Q8N4T0
description Carboxypeptidase A6 OS=Homo sapiens GN=CPA6 PE=1 SV=2
trembl
ID A0A067KP91
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08094 PE=4 SV=1
Gene Ontology
ID GO:0016020
description carboxypeptidase a6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_30686: 74461-74921 , PASA_asmbl_30687: 77811-78521
cDNA
(Sanger)
(ID:Location)		 023_B22.ab1: 77823-78521

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002928_090 0.0 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
2 Hb_000014_040 0.066888644 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001242_120 0.0676320386 - - PREDICTED: carboxypeptidase D [Jatropha curcas]
4 Hb_001051_050 0.0692198148 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005725_130 0.0692874862 - - PREDICTED: uncharacterized protein KIAA0930 homolog isoform X2 [Jatropha curcas]
6 Hb_000390_050 0.079232617 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
7 Hb_009569_040 0.0802116491 - - PREDICTED: uncharacterized protein LOC105635573 [Jatropha curcas]
8 Hb_001157_230 0.0809146131 - - Protein AFR, putative [Ricinus communis]
9 Hb_000359_210 0.0815844415 - - conserved hypothetical protein [Ricinus communis]
10 Hb_170138_010 0.081696147 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000056_130 0.0835257498 - - Sucrose Transporter 2C [Hevea brasiliensis subsp. brasiliensis]
12 Hb_003878_200 0.0850163517 - - PREDICTED: V-type proton ATPase subunit D-like [Jatropha curcas]
13 Hb_003878_150 0.0851938353 - - PREDICTED: GPI mannosyltransferase 3 [Jatropha curcas]
14 Hb_002226_080 0.0867192462 - - PREDICTED: uncharacterized protein LOC105641402 isoform X1 [Jatropha curcas]
15 Hb_003206_110 0.0871094882 - - Putative 1-aminocyclopropane-1-carboxylate deaminase [Gossypium arboreum]
16 Hb_001662_100 0.087733195 - - PREDICTED: serine/threonine-protein kinase EDR1-like [Jatropha curcas]
17 Hb_003998_040 0.0884742136 - - organic anion transporter, putative [Ricinus communis]
18 Hb_000787_160 0.089789831 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
19 Hb_015099_030 0.0904677522 - - PREDICTED: uncharacterized protein LOC105649867 [Jatropha curcas]
20 Hb_002902_130 0.0912335953 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]

Gene co-expression network

sample Hb_002928_090 Hb_002928_090 Hb_000014_040 Hb_000014_040 Hb_002928_090--Hb_000014_040 Hb_001242_120 Hb_001242_120 Hb_002928_090--Hb_001242_120 Hb_001051_050 Hb_001051_050 Hb_002928_090--Hb_001051_050 Hb_005725_130 Hb_005725_130 Hb_002928_090--Hb_005725_130 Hb_000390_050 Hb_000390_050 Hb_002928_090--Hb_000390_050 Hb_009569_040 Hb_009569_040 Hb_002928_090--Hb_009569_040 Hb_000014_040--Hb_001051_050 Hb_000014_040--Hb_000390_050 Hb_170138_010 Hb_170138_010 Hb_000014_040--Hb_170138_010 Hb_000399_060 Hb_000399_060 Hb_000014_040--Hb_000399_060 Hb_000684_210 Hb_000684_210 Hb_000014_040--Hb_000684_210 Hb_012733_040 Hb_012733_040 Hb_001242_120--Hb_012733_040 Hb_001242_120--Hb_005725_130 Hb_002301_100 Hb_002301_100 Hb_001242_120--Hb_002301_100 Hb_001242_120--Hb_001051_050 Hb_003878_150 Hb_003878_150 Hb_001242_120--Hb_003878_150 Hb_000116_190 Hb_000116_190 Hb_001051_050--Hb_000116_190 Hb_000645_280 Hb_000645_280 Hb_001051_050--Hb_000645_280 Hb_007821_030 Hb_007821_030 Hb_001051_050--Hb_007821_030 Hb_005725_130--Hb_003878_150 Hb_005725_130--Hb_009569_040 Hb_000120_370 Hb_000120_370 Hb_005725_130--Hb_000120_370 Hb_001662_100 Hb_001662_100 Hb_005725_130--Hb_001662_100 Hb_007765_040 Hb_007765_040 Hb_000390_050--Hb_007765_040 Hb_000417_390 Hb_000417_390 Hb_000390_050--Hb_000417_390 Hb_003097_140 Hb_003097_140 Hb_000390_050--Hb_003097_140 Hb_007416_210 Hb_007416_210 Hb_000390_050--Hb_007416_210 Hb_002902_130 Hb_002902_130 Hb_000390_050--Hb_002902_130 Hb_009569_040--Hb_001662_100 Hb_000256_150 Hb_000256_150 Hb_009569_040--Hb_000256_150 Hb_000049_020 Hb_000049_020 Hb_009569_040--Hb_000049_020 Hb_007481_010 Hb_007481_010 Hb_009569_040--Hb_007481_010 Hb_002414_050 Hb_002414_050 Hb_009569_040--Hb_002414_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.74547 6.16061 13.2476 25.0159 8.35416 11.9907
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.87084 8.60703 7.4183 15.6078 21.8791

CAGE analysis