Hb_003581_010

Information

Type -
Description -
Location Contig3581: 1259-1477
Sequence    

Annotation

kegg
ID mtr:MTR_5g038220
description RCC1 and BTB domain-containing protein
nr
ID CAN76647.1
description hypothetical protein VITISV_004687 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BAQ6
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004687 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36927: 1169-2700
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_010 0.0 - - hypothetical protein VITISV_004687 [Vitis vinifera]
2 Hb_000001_040 0.1264008968 - - unnamed protein product [Coffea canephora]
3 Hb_168737_010 0.1403766784 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_000265_130 0.141446894 - - -
5 Hb_128998_010 0.1414554018 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
6 Hb_000007_460 0.1417027082 - - PREDICTED: uncharacterized protein LOC105641948 [Jatropha curcas]
7 Hb_116632_010 0.1423805102 - - unnamed protein product [Vitis vinifera]
8 Hb_013691_030 0.1493897887 - - hypothetical protein CISIN_1g020131mg [Citrus sinensis]
9 Hb_106005_010 0.1518650355 - - EG5651 [Manihot esculenta]
10 Hb_010504_030 0.155725401 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
11 Hb_007188_020 0.158565382 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
12 Hb_007484_040 0.1641801213 - - -
13 Hb_005085_030 0.1687774826 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
14 Hb_000176_120 0.1718265149 - - seryl-tRNA synthetase, putative [Ricinus communis]
15 Hb_169170_010 0.1744329192 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
16 Hb_001427_060 0.1758734363 - - -
17 Hb_088065_010 0.1773441735 - - hypothetical protein glysoja_007934 [Glycine soja]
18 Hb_032225_020 0.1781779278 - - hypothetical protein POPTR_0006s08140g [Populus trichocarpa]
19 Hb_005965_010 0.1790612773 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
20 Hb_012052_010 0.1796567949 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]

Gene co-expression network

sample Hb_003581_010 Hb_003581_010 Hb_000001_040 Hb_000001_040 Hb_003581_010--Hb_000001_040 Hb_168737_010 Hb_168737_010 Hb_003581_010--Hb_168737_010 Hb_000265_130 Hb_000265_130 Hb_003581_010--Hb_000265_130 Hb_128998_010 Hb_128998_010 Hb_003581_010--Hb_128998_010 Hb_000007_460 Hb_000007_460 Hb_003581_010--Hb_000007_460 Hb_116632_010 Hb_116632_010 Hb_003581_010--Hb_116632_010 Hb_000001_040--Hb_000265_130 Hb_106005_010 Hb_106005_010 Hb_000001_040--Hb_106005_010 Hb_007188_020 Hb_007188_020 Hb_000001_040--Hb_007188_020 Hb_000176_120 Hb_000176_120 Hb_000001_040--Hb_000176_120 Hb_004117_180 Hb_004117_180 Hb_000001_040--Hb_004117_180 Hb_073559_010 Hb_073559_010 Hb_168737_010--Hb_073559_010 Hb_032225_020 Hb_032225_020 Hb_168737_010--Hb_032225_020 Hb_005731_140 Hb_005731_140 Hb_168737_010--Hb_005731_140 Hb_168737_010--Hb_000265_130 Hb_000832_240 Hb_000832_240 Hb_168737_010--Hb_000832_240 Hb_000261_360 Hb_000261_360 Hb_000265_130--Hb_000261_360 Hb_010504_030 Hb_010504_030 Hb_000265_130--Hb_010504_030 Hb_000265_130--Hb_000176_120 Hb_000265_130--Hb_007188_020 Hb_112047_010 Hb_112047_010 Hb_128998_010--Hb_112047_010 Hb_128998_010--Hb_010504_030 Hb_006663_090 Hb_006663_090 Hb_128998_010--Hb_006663_090 Hb_000429_250 Hb_000429_250 Hb_128998_010--Hb_000429_250 Hb_128998_010--Hb_000007_460 Hb_001767_120 Hb_001767_120 Hb_128998_010--Hb_001767_120 Hb_000007_460--Hb_010504_030 Hb_000007_460--Hb_007188_020 Hb_013691_030 Hb_013691_030 Hb_000007_460--Hb_013691_030 Hb_000015_070 Hb_000015_070 Hb_000007_460--Hb_000015_070 Hb_116632_010--Hb_007188_020 Hb_068014_010 Hb_068014_010 Hb_116632_010--Hb_068014_010 Hb_005085_030 Hb_005085_030 Hb_116632_010--Hb_005085_030 Hb_116632_010--Hb_000265_130 Hb_017462_010 Hb_017462_010 Hb_116632_010--Hb_017462_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.5038 19.9869 14.2315 57.7345 21.4073 291.461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
57.8292 66.3393 8.30161 31.1512 5.81423

CAGE analysis