Hb_003687_020

Information

Type -
Description -
Location Contig3687: 15410-17316
Sequence    

Annotation

kegg
ID rcu:RCOM_1169110
description 60S ribosomal protein L14, putative
nr
ID XP_012069863.1
description PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
swissprot
ID Q9SIM4
description 60S ribosomal protein L14-1 OS=Arabidopsis thaliana GN=RPL14A PE=2 SV=1
trembl
ID A0A067L774
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02353 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l14-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37903: 15501-17307 , PASA_asmbl_37904: 15783-16402
cDNA
(Sanger)
(ID:Location)		 010_D10.ab1: 15503-17271 , 048_J20.ab1: 15503-17319

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003687_020 0.0 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
2 Hb_000193_350 0.0840924133 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
3 Hb_025193_050 0.0947142122 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
4 Hb_007317_060 0.0971648847 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
5 Hb_005224_050 0.0994925024 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
6 Hb_002259_150 0.1006975462 - - BnaC04g40780D [Brassica napus]
7 Hb_000684_230 0.1015115675 - - 40S ribosomal protein S23, putative [Ricinus communis]
8 Hb_001269_320 0.1134812662 - - 40S ribosomal protein S12A [Hevea brasiliensis]
9 Hb_007441_270 0.1177909719 - - PREDICTED: 40S ribosomal protein S11 [Jatropha curcas]
10 Hb_000144_090 0.1191187154 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
11 Hb_004007_100 0.119642825 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
12 Hb_000015_210 0.1199258164 - - PREDICTED: uncharacterized protein LOC105647781 [Jatropha curcas]
13 Hb_009543_030 0.1200119203 - - prefoldin subunit 1 [Jatropha curcas]
14 Hb_008173_120 0.1214008885 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000003_730 0.122687428 - - DNA repair/transcription protein met18/mms19, putative [Ricinus communis]
16 Hb_002272_260 0.1232067101 - - -
17 Hb_012515_010 0.1242229508 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
18 Hb_000175_400 0.1251938683 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000189_530 0.1255145762 - - 40S ribosomal protein S24B [Hevea brasiliensis]
20 Hb_004453_150 0.1266015453 - - BnaC02g13240D [Brassica napus]

Gene co-expression network

sample Hb_003687_020 Hb_003687_020 Hb_000193_350 Hb_000193_350 Hb_003687_020--Hb_000193_350 Hb_025193_050 Hb_025193_050 Hb_003687_020--Hb_025193_050 Hb_007317_060 Hb_007317_060 Hb_003687_020--Hb_007317_060 Hb_005224_050 Hb_005224_050 Hb_003687_020--Hb_005224_050 Hb_002259_150 Hb_002259_150 Hb_003687_020--Hb_002259_150 Hb_000684_230 Hb_000684_230 Hb_003687_020--Hb_000684_230 Hb_000175_400 Hb_000175_400 Hb_000193_350--Hb_000175_400 Hb_000193_350--Hb_005224_050 Hb_000189_530 Hb_000189_530 Hb_000193_350--Hb_000189_530 Hb_017711_010 Hb_017711_010 Hb_000193_350--Hb_017711_010 Hb_011016_090 Hb_011016_090 Hb_000193_350--Hb_011016_090 Hb_012515_010 Hb_012515_010 Hb_025193_050--Hb_012515_010 Hb_011139_020 Hb_011139_020 Hb_025193_050--Hb_011139_020 Hb_024650_050 Hb_024650_050 Hb_025193_050--Hb_024650_050 Hb_004595_020 Hb_004595_020 Hb_025193_050--Hb_004595_020 Hb_000152_430 Hb_000152_430 Hb_025193_050--Hb_000152_430 Hb_004453_150 Hb_004453_150 Hb_025193_050--Hb_004453_150 Hb_000380_010 Hb_000380_010 Hb_007317_060--Hb_000380_010 Hb_007317_060--Hb_002259_150 Hb_008173_120 Hb_008173_120 Hb_007317_060--Hb_008173_120 Hb_007317_060--Hb_000684_230 Hb_000648_030 Hb_000648_030 Hb_007317_060--Hb_000648_030 Hb_005224_050--Hb_017711_010 Hb_003058_220 Hb_003058_220 Hb_005224_050--Hb_003058_220 Hb_000199_070 Hb_000199_070 Hb_005224_050--Hb_000199_070 Hb_002293_030 Hb_002293_030 Hb_005224_050--Hb_002293_030 Hb_002272_260 Hb_002272_260 Hb_002259_150--Hb_002272_260 Hb_102156_010 Hb_102156_010 Hb_002259_150--Hb_102156_010 Hb_100777_010 Hb_100777_010 Hb_002259_150--Hb_100777_010 Hb_002259_150--Hb_004453_150 Hb_002259_150--Hb_000193_350 Hb_000684_230--Hb_008173_120 Hb_007193_100 Hb_007193_100 Hb_000684_230--Hb_007193_100 Hb_000024_080 Hb_000024_080 Hb_000684_230--Hb_000024_080 Hb_000003_730 Hb_000003_730 Hb_000684_230--Hb_000003_730 Hb_000103_140 Hb_000103_140 Hb_000684_230--Hb_000103_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
215.581 31.132 61.4014 141.265 244.648 729.341
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
407.981 714.549 200.041 174.676 70.7955

CAGE analysis