Hb_004453_150

Information

Type -
Description -
Location Contig4453: 96915-99529
Sequence    

Annotation

kegg
ID pvu:PHAVU_009G095600g
description hypothetical protein
nr
ID CDY06600.1
description BnaC02g13240D [Brassica napus]
swissprot
ID Q8H156
description GTP-binding nuclear protein Ran-3 OS=Arabidopsis thaliana GN=RAN3 PE=1 SV=2
trembl
ID A0A078EX10
description BnaC02g13240D protein OS=Brassica napus GN=BnaC02g13240D PE=4 SV=1
Gene Ontology
ID GO:0005634
description gtp-binding nuclear protein ran-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_42984: 97077-97829 , PASA_asmbl_42985: 98026-98615 , PASA_asmbl_42986: 99114-99430
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004453_150 0.0 - - BnaC02g13240D [Brassica napus]
2 Hb_015057_010 0.0646068273 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
3 Hb_011161_040 0.0778473576 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
4 Hb_025193_050 0.0787474463 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
5 Hb_007193_100 0.0808739931 - - syntaxin family protein [Populus trichocarpa]
6 Hb_002272_260 0.0819029783 - - -
7 Hb_000175_070 0.0846228951 - - PREDICTED: probable U3 small nucleolar RNA-associated protein 11 isoform X1 [Jatropha curcas]
8 Hb_005686_110 0.0846715195 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
9 Hb_000175_400 0.0879816488 - - conserved hypothetical protein [Ricinus communis]
10 Hb_004143_110 0.088502012 - - PREDICTED: uncharacterized protein LOC105630719 isoform X2 [Jatropha curcas]
11 Hb_004724_100 0.0898502816 - - 60S ribosomal protein L10aA [Hevea brasiliensis]
12 Hb_001235_070 0.0925193606 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008173_120 0.092898697 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000676_290 0.0934727368 - - PREDICTED: glutaredoxin-C3 [Jatropha curcas]
15 Hb_006788_070 0.0943356387 - - 2-methyl-6-geranylgeranylbenzoquinone methyltranferase [Hevea brasiliensis]
16 Hb_002259_150 0.0946458814 - - BnaC04g40780D [Brassica napus]
17 Hb_011016_090 0.0968188154 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
18 Hb_002259_030 0.0978548694 - - conserved hypothetical protein [Ricinus communis]
19 Hb_007166_050 0.0978783886 - - -
20 Hb_001246_100 0.0983532486 - - Ras-related small GTP-binding family protein [Theobroma cacao]

Gene co-expression network

sample Hb_004453_150 Hb_004453_150 Hb_015057_010 Hb_015057_010 Hb_004453_150--Hb_015057_010 Hb_011161_040 Hb_011161_040 Hb_004453_150--Hb_011161_040 Hb_025193_050 Hb_025193_050 Hb_004453_150--Hb_025193_050 Hb_007193_100 Hb_007193_100 Hb_004453_150--Hb_007193_100 Hb_002272_260 Hb_002272_260 Hb_004453_150--Hb_002272_260 Hb_000175_070 Hb_000175_070 Hb_004453_150--Hb_000175_070 Hb_000963_190 Hb_000963_190 Hb_015057_010--Hb_000963_190 Hb_001454_140 Hb_001454_140 Hb_015057_010--Hb_001454_140 Hb_001235_070 Hb_001235_070 Hb_015057_010--Hb_001235_070 Hb_000380_010 Hb_000380_010 Hb_015057_010--Hb_000380_010 Hb_009558_020 Hb_009558_020 Hb_015057_010--Hb_009558_020 Hb_011139_020 Hb_011139_020 Hb_011161_040--Hb_011139_020 Hb_001019_090 Hb_001019_090 Hb_011161_040--Hb_001019_090 Hb_011161_040--Hb_025193_050 Hb_000152_430 Hb_000152_430 Hb_011161_040--Hb_000152_430 Hb_001133_020 Hb_001133_020 Hb_011161_040--Hb_001133_020 Hb_012515_010 Hb_012515_010 Hb_025193_050--Hb_012515_010 Hb_025193_050--Hb_011139_020 Hb_024650_050 Hb_024650_050 Hb_025193_050--Hb_024650_050 Hb_004595_020 Hb_004595_020 Hb_025193_050--Hb_004595_020 Hb_025193_050--Hb_000152_430 Hb_007193_100--Hb_000175_070 Hb_063134_010 Hb_063134_010 Hb_007193_100--Hb_063134_010 Hb_000317_430 Hb_000317_430 Hb_007193_100--Hb_000317_430 Hb_029510_140 Hb_029510_140 Hb_007193_100--Hb_029510_140 Hb_118419_020 Hb_118419_020 Hb_007193_100--Hb_118419_020 Hb_001246_100 Hb_001246_100 Hb_007193_100--Hb_001246_100 Hb_000771_100 Hb_000771_100 Hb_002272_260--Hb_000771_100 Hb_000676_290 Hb_000676_290 Hb_002272_260--Hb_000676_290 Hb_002301_280 Hb_002301_280 Hb_002272_260--Hb_002301_280 Hb_002259_150 Hb_002259_150 Hb_002272_260--Hb_002259_150 Hb_011174_010 Hb_011174_010 Hb_002272_260--Hb_011174_010 Hb_000175_070--Hb_000317_430 Hb_000175_070--Hb_029510_140 Hb_000175_070--Hb_118419_020 Hb_006788_070 Hb_006788_070 Hb_000175_070--Hb_006788_070 Hb_000175_070--Hb_009558_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
569.238 109.702 129.49 253.701 505.925 1343.98
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1034.67 886.365 602.35 270.784 75.7602

CAGE analysis