Hb_007245_090

Information

Type -
Description -
Location Contig7245: 77168-80631
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 018_I22.ab1: 77135-77599

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007245_090 0.0 - - -
2 Hb_000014_100 0.072047969 - - -
3 Hb_005214_110 0.0912599025 - - -
4 Hb_001930_070 0.0917795903 - - -
5 Hb_006499_010 0.0918135213 - - -
6 Hb_004882_020 0.1063665981 - - -
7 Hb_000339_070 0.1117569481 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Populus euphratica]
8 Hb_000809_040 0.1144635333 - - Serine/threonine-protein kinase SAPK10, putative [Ricinus communis]
9 Hb_003747_240 0.1233052822 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
10 Hb_000072_280 0.1256048455 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
11 Hb_001514_190 0.1274720545 - - -
12 Hb_000371_110 0.1360628578 - - -
13 Hb_001186_060 0.1362610645 - - -
14 Hb_001158_030 0.1377919039 - - -
15 Hb_000085_310 0.1395031683 - - hypothetical protein JCGZ_00974 [Jatropha curcas]
16 Hb_000163_290 0.1410322591 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
17 Hb_030982_040 0.1410610824 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
18 Hb_001437_240 0.1414563878 - - -
19 Hb_000771_140 0.1441893995 - - PREDICTED: abscisic acid receptor PYL8 [Jatropha curcas]
20 Hb_002662_100 0.1443393096 - - PREDICTED: uncharacterized protein LOC105630921 [Jatropha curcas]

Gene co-expression network

sample Hb_007245_090 Hb_007245_090 Hb_000014_100 Hb_000014_100 Hb_007245_090--Hb_000014_100 Hb_005214_110 Hb_005214_110 Hb_007245_090--Hb_005214_110 Hb_001930_070 Hb_001930_070 Hb_007245_090--Hb_001930_070 Hb_006499_010 Hb_006499_010 Hb_007245_090--Hb_006499_010 Hb_004882_020 Hb_004882_020 Hb_007245_090--Hb_004882_020 Hb_000339_070 Hb_000339_070 Hb_007245_090--Hb_000339_070 Hb_000014_100--Hb_006499_010 Hb_000014_100--Hb_001930_070 Hb_003747_240 Hb_003747_240 Hb_000014_100--Hb_003747_240 Hb_011716_040 Hb_011716_040 Hb_000014_100--Hb_011716_040 Hb_001158_030 Hb_001158_030 Hb_000014_100--Hb_001158_030 Hb_005214_110--Hb_001930_070 Hb_005214_110--Hb_001158_030 Hb_005214_110--Hb_000339_070 Hb_005214_110--Hb_000014_100 Hb_001186_060 Hb_001186_060 Hb_005214_110--Hb_001186_060 Hb_001930_070--Hb_006499_010 Hb_001930_070--Hb_001186_060 Hb_000033_050 Hb_000033_050 Hb_001930_070--Hb_000033_050 Hb_002924_050 Hb_002924_050 Hb_001930_070--Hb_002924_050 Hb_000163_290 Hb_000163_290 Hb_006499_010--Hb_000163_290 Hb_006499_010--Hb_000033_050 Hb_006499_010--Hb_001186_060 Hb_006499_010--Hb_003747_240 Hb_000809_040 Hb_000809_040 Hb_004882_020--Hb_000809_040 Hb_001437_240 Hb_001437_240 Hb_004882_020--Hb_001437_240 Hb_001981_090 Hb_001981_090 Hb_004882_020--Hb_001981_090 Hb_008695_190 Hb_008695_190 Hb_004882_020--Hb_008695_190 Hb_001366_220 Hb_001366_220 Hb_004882_020--Hb_001366_220 Hb_000072_280 Hb_000072_280 Hb_004882_020--Hb_000072_280 Hb_005031_070 Hb_005031_070 Hb_000339_070--Hb_005031_070 Hb_002849_210 Hb_002849_210 Hb_000339_070--Hb_002849_210 Hb_004223_230 Hb_004223_230 Hb_000339_070--Hb_004223_230 Hb_000116_470 Hb_000116_470 Hb_000339_070--Hb_000116_470
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
71.1454 23.7193 1.96272 0.800528 85.4536 36.3509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
71.6972 62.7254 75.5756 13.7045 1.12198

CAGE analysis