Hb_007894_130

Information

Type -
Description -
Location Contig7894: 109025-113425
Sequence    

Annotation

kegg
ID rcu:RCOM_0584960
description hypothetical protein
nr
ID XP_002522948.1
description hypothetical protein RCOM_0584960 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SAC9
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0584960 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_58266: 109031-113521 , PASA_asmbl_58268: 110827-110988 , PASA_asmbl_58269: 111390-111507
cDNA
(Sanger)
(ID:Location)		 029_L08.ab1: 109036-112069

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007894_130 0.0 - - hypothetical protein RCOM_0584960 [Ricinus communis]
2 Hb_001055_030 0.0723972045 - - PREDICTED: F-box/LRR-repeat protein 14 isoform X1 [Jatropha curcas]
3 Hb_000061_490 0.0746541407 - - hypothetical protein CISIN_1g0362002mg, partial [Citrus sinensis]
4 Hb_000780_170 0.0786942853 - - PREDICTED: OBERON-like protein [Jatropha curcas]
5 Hb_005260_010 0.0837844188 - - PREDICTED: golgin candidate 6 isoform X1 [Jatropha curcas]
6 Hb_000768_180 0.0858535696 - - PREDICTED: uncharacterized protein LOC105632528 [Jatropha curcas]
7 Hb_000236_220 0.086356381 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-5 [Jatropha curcas]
8 Hb_093084_070 0.086996332 desease resistance Gene Name: Baculo_PEP_C Disease resistance protein RPP13, putative [Ricinus communis]
9 Hb_000236_410 0.0887289083 - - Paramyosin, putative [Ricinus communis]
10 Hb_000059_020 0.0915819928 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]
11 Hb_001141_370 0.0917060693 - - PREDICTED: uncharacterized protein LOC105631986 [Jatropha curcas]
12 Hb_003373_040 0.0922366352 - - hypothetical protein ARALYDRAFT_356474 [Arabidopsis lyrata subsp. lyrata]
13 Hb_000264_080 0.0931100169 - - hypothetical protein JCGZ_21412 [Jatropha curcas]
14 Hb_010712_090 0.0933765139 - - PREDICTED: uncharacterized protein LOC105631276 [Jatropha curcas]
15 Hb_000363_370 0.0957013304 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
16 Hb_002325_040 0.0972546721 - - PREDICTED: uncharacterized protein LOC105645422 isoform X1 [Jatropha curcas]
17 Hb_001033_050 0.0980484747 - - PREDICTED: acetylornithine deacetylase [Jatropha curcas]
18 Hb_000932_070 0.0983963182 - - PREDICTED: asparagine synthetase [glutamine-hydrolyzing] 3 [Jatropha curcas]
19 Hb_002078_220 0.0989881065 - - PREDICTED: CTD small phosphatase-like protein 2 isoform X1 [Jatropha curcas]
20 Hb_000862_040 0.0992614893 - - ara4-interacting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_007894_130 Hb_007894_130 Hb_001055_030 Hb_001055_030 Hb_007894_130--Hb_001055_030 Hb_000061_490 Hb_000061_490 Hb_007894_130--Hb_000061_490 Hb_000780_170 Hb_000780_170 Hb_007894_130--Hb_000780_170 Hb_005260_010 Hb_005260_010 Hb_007894_130--Hb_005260_010 Hb_000768_180 Hb_000768_180 Hb_007894_130--Hb_000768_180 Hb_000236_220 Hb_000236_220 Hb_007894_130--Hb_000236_220 Hb_000236_410 Hb_000236_410 Hb_001055_030--Hb_000236_410 Hb_093084_070 Hb_093084_070 Hb_001055_030--Hb_093084_070 Hb_008143_070 Hb_008143_070 Hb_001055_030--Hb_008143_070 Hb_000009_330 Hb_000009_330 Hb_001055_030--Hb_000009_330 Hb_000622_250 Hb_000622_250 Hb_001055_030--Hb_000622_250 Hb_000264_080 Hb_000264_080 Hb_000061_490--Hb_000264_080 Hb_004371_010 Hb_004371_010 Hb_000061_490--Hb_004371_010 Hb_004410_070 Hb_004410_070 Hb_000061_490--Hb_004410_070 Hb_009780_100 Hb_009780_100 Hb_000061_490--Hb_009780_100 Hb_009771_100 Hb_009771_100 Hb_000061_490--Hb_009771_100 Hb_008253_030 Hb_008253_030 Hb_000780_170--Hb_008253_030 Hb_000120_660 Hb_000120_660 Hb_000780_170--Hb_000120_660 Hb_001033_050 Hb_001033_050 Hb_000780_170--Hb_001033_050 Hb_001147_110 Hb_001147_110 Hb_000780_170--Hb_001147_110 Hb_000418_140 Hb_000418_140 Hb_000780_170--Hb_000418_140 Hb_000046_070 Hb_000046_070 Hb_000780_170--Hb_000046_070 Hb_000594_040 Hb_000594_040 Hb_005260_010--Hb_000594_040 Hb_005260_010--Hb_000768_180 Hb_005260_010--Hb_000236_220 Hb_000640_310 Hb_000640_310 Hb_005260_010--Hb_000640_310 Hb_000191_130 Hb_000191_130 Hb_005260_010--Hb_000191_130 Hb_005260_010--Hb_000418_140 Hb_000862_040 Hb_000862_040 Hb_000768_180--Hb_000862_040 Hb_000556_170 Hb_000556_170 Hb_000768_180--Hb_000556_170 Hb_005542_050 Hb_005542_050 Hb_000768_180--Hb_005542_050 Hb_000768_180--Hb_000236_220 Hb_010712_090 Hb_010712_090 Hb_000768_180--Hb_010712_090 Hb_000236_220--Hb_093084_070 Hb_003373_040 Hb_003373_040 Hb_000236_220--Hb_003373_040 Hb_004480_040 Hb_004480_040 Hb_000236_220--Hb_004480_040 Hb_001141_370 Hb_001141_370 Hb_000236_220--Hb_001141_370 Hb_000441_070 Hb_000441_070 Hb_000236_220--Hb_000441_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.47701 19.5261 6.68589 8.15563 8.75553 10.7211
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.3831 4.3137 3.96935 8.26262 3.24924

CAGE analysis