Hb_008173_120

Information

Type -
Description -
Location Contig8173: 58534-60807
Sequence    

Annotation

kegg
ID rcu:RCOM_1686520
description hypothetical protein
nr
ID XP_002509795.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID A4XKC6
description Putative Holliday junction resolvase OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp8T 6331) GN=Csac_1776 PE=3 SV=1
trembl
ID B9RCB1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1686520 PE=3 SV=1
Gene Ontology
ID GO:0003676
description polynucleotidyl transferase isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59469: 58840-59322 , PASA_asmbl_59470: 59693-61185
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008173_120 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000684_230 0.0723905346 - - 40S ribosomal protein S23, putative [Ricinus communis]
3 Hb_000230_540 0.082108831 - - PREDICTED: glycine-rich RNA-binding protein 3, mitochondrial [Sesamum indicum]
4 Hb_007193_100 0.084738735 - - syntaxin family protein [Populus trichocarpa]
5 Hb_007317_060 0.0851118441 - - 60S ribosomal protein L10aB [Hevea brasiliensis]
6 Hb_004007_100 0.085171622 - - PREDICTED: 60S ribosomal protein L26-1 [Jatropha curcas]
7 Hb_000103_140 0.0899573953 - - ribosomal protein S3a [Populus trichocarpa]
8 Hb_000024_080 0.0910806471 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
9 Hb_004453_150 0.092898697 - - BnaC02g13240D [Brassica napus]
10 Hb_000087_020 0.093373971 - - PREDICTED: peptidyl-tRNA hydrolase 2, mitochondrial [Jatropha curcas]
11 Hb_000751_130 0.0938336253 - - PREDICTED: mitochondrial import inner membrane translocase subunit tim16 [Jatropha curcas]
12 Hb_000274_020 0.094282799 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
13 Hb_001718_100 0.0943693248 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
14 Hb_002701_050 0.0945562294 - - PREDICTED: 60S ribosomal protein L7a-like [Jatropha curcas]
15 Hb_000380_010 0.0955213712 - - PREDICTED: uncharacterized protein LOC105640155 isoform X3 [Jatropha curcas]
16 Hb_000144_090 0.0956266738 transcription factor TF Family: GNAT Glucosamine 6-phosphate N-acetyltransferase, putative [Ricinus communis]
17 Hb_000444_050 0.0984072245 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
18 Hb_025193_050 0.0992949993 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
19 Hb_015057_010 0.0995775423 - - PREDICTED: uncharacterized exonuclease domain-containing protein At3g15140 [Jatropha curcas]
20 Hb_001258_080 0.1002101891 - - PREDICTED: uncharacterized protein LOC105639921 [Jatropha curcas]

Gene co-expression network

sample Hb_008173_120 Hb_008173_120 Hb_000684_230 Hb_000684_230 Hb_008173_120--Hb_000684_230 Hb_000230_540 Hb_000230_540 Hb_008173_120--Hb_000230_540 Hb_007193_100 Hb_007193_100 Hb_008173_120--Hb_007193_100 Hb_007317_060 Hb_007317_060 Hb_008173_120--Hb_007317_060 Hb_004007_100 Hb_004007_100 Hb_008173_120--Hb_004007_100 Hb_000103_140 Hb_000103_140 Hb_008173_120--Hb_000103_140 Hb_000684_230--Hb_007193_100 Hb_000024_080 Hb_000024_080 Hb_000684_230--Hb_000024_080 Hb_000003_730 Hb_000003_730 Hb_000684_230--Hb_000003_730 Hb_000684_230--Hb_007317_060 Hb_000684_230--Hb_000103_140 Hb_004032_100 Hb_004032_100 Hb_000230_540--Hb_004032_100 Hb_000230_540--Hb_000024_080 Hb_000751_130 Hb_000751_130 Hb_000230_540--Hb_000751_130 Hb_148209_080 Hb_148209_080 Hb_000230_540--Hb_148209_080 Hb_005117_010 Hb_005117_010 Hb_000230_540--Hb_005117_010 Hb_000205_270 Hb_000205_270 Hb_000230_540--Hb_000205_270 Hb_000175_070 Hb_000175_070 Hb_007193_100--Hb_000175_070 Hb_063134_010 Hb_063134_010 Hb_007193_100--Hb_063134_010 Hb_000317_430 Hb_000317_430 Hb_007193_100--Hb_000317_430 Hb_029510_140 Hb_029510_140 Hb_007193_100--Hb_029510_140 Hb_118419_020 Hb_118419_020 Hb_007193_100--Hb_118419_020 Hb_001246_100 Hb_001246_100 Hb_007193_100--Hb_001246_100 Hb_000380_010 Hb_000380_010 Hb_007317_060--Hb_000380_010 Hb_002259_150 Hb_002259_150 Hb_007317_060--Hb_002259_150 Hb_000648_030 Hb_000648_030 Hb_007317_060--Hb_000648_030 Hb_003687_020 Hb_003687_020 Hb_007317_060--Hb_003687_020 Hb_002701_050 Hb_002701_050 Hb_004007_100--Hb_002701_050 Hb_004007_100--Hb_148209_080 Hb_004007_100--Hb_000684_230 Hb_001242_110 Hb_001242_110 Hb_004007_100--Hb_001242_110 Hb_031042_010 Hb_031042_010 Hb_004007_100--Hb_031042_010 Hb_000103_140--Hb_000175_070 Hb_000103_140--Hb_007193_100 Hb_009543_030 Hb_009543_030 Hb_000103_140--Hb_009543_030 Hb_000103_140--Hb_063134_010 Hb_000103_140--Hb_029510_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.57657 2.52969 2.29343 4.19611 7.63684 21.2554
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.1214 17.8317 13.1129 4.95261 2.25481

CAGE analysis