Hb_010417_020

Information

Type -
Description -
Location Contig10417: 16341-18315
Sequence    

Annotation

kegg
ID rcu:RCOM_1437440
description interferon-induced GTP-binding protein mx, putative
nr
ID XP_002512616.1
description interferon-induced GTP-binding protein mx, putative [Ricinus communis]
swissprot
ID Q9ZP55
description Dynamin-related protein 4C OS=Arabidopsis thaliana GN=DRP4C PE=2 SV=1
trembl
ID B9RFU7
description Interferon-induced GTP-binding protein mx, putative OS=Ricinus communis GN=RCOM_1437440 PE=4 SV=1
Gene Ontology
ID GO:0000166
description dynamin-related protein 4c-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01532: 16451-18495
cDNA
(Sanger)
(ID:Location)		 004_G10.ab1: 17573-18384

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010417_020 0.0 - - interferon-induced GTP-binding protein mx, putative [Ricinus communis]
2 Hb_011457_170 0.094883034 - - PREDICTED: chlorophyllase-1-like [Jatropha curcas]
3 Hb_000157_010 0.1181035309 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
4 Hb_094744_010 0.1297192236 - - PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
5 Hb_006594_020 0.140946929 - - PREDICTED: uncharacterized protein LOC105138974 isoform X1 [Populus euphratica]
6 Hb_010589_040 0.1511880658 - - conserved hypothetical protein [Ricinus communis]
7 Hb_004453_140 0.1529318047 - - PREDICTED: uncharacterized protein LOC104880181 [Vitis vinifera]
8 Hb_001268_400 0.1555414013 - - PREDICTED: uncharacterized protein LOC104583970 [Brachypodium distachyon]
9 Hb_000352_140 0.1564982626 - - -
10 Hb_001232_130 0.1566099381 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
11 Hb_168501_010 0.1606418928 desease resistance Gene Name: NB-ARC leucine-rich repeat-containing protein, putative [Ricinus communis]
12 Hb_001946_320 0.1615056859 - - PREDICTED: F-box/kelch-repeat protein At1g55270-like [Jatropha curcas]
13 Hb_000193_240 0.161649126 - - hypothetical protein CISIN_1g0449881mg, partial [Citrus sinensis]
14 Hb_000329_600 0.164303915 - - PREDICTED: cell number regulator 6-like isoform X2 [Populus euphratica]
15 Hb_001143_090 0.1650908569 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 6 [Jatropha curcas]
16 Hb_152439_020 0.1650956535 - - PREDICTED: copper-transporting ATPase RAN1 isoform X1 [Jatropha curcas]
17 Hb_088202_010 0.1650969195 - - hypothetical protein JCGZ_13241 [Jatropha curcas]
18 Hb_008066_040 0.1662192461 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
19 Hb_005614_050 0.1671748524 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
20 Hb_000749_250 0.1674510091 - - PREDICTED: lanC-like protein GCR2 [Jatropha curcas]

Gene co-expression network

sample Hb_010417_020 Hb_010417_020 Hb_011457_170 Hb_011457_170 Hb_010417_020--Hb_011457_170 Hb_000157_010 Hb_000157_010 Hb_010417_020--Hb_000157_010 Hb_094744_010 Hb_094744_010 Hb_010417_020--Hb_094744_010 Hb_006594_020 Hb_006594_020 Hb_010417_020--Hb_006594_020 Hb_010589_040 Hb_010589_040 Hb_010417_020--Hb_010589_040 Hb_004453_140 Hb_004453_140 Hb_010417_020--Hb_004453_140 Hb_001488_100 Hb_001488_100 Hb_011457_170--Hb_001488_100 Hb_001946_320 Hb_001946_320 Hb_011457_170--Hb_001946_320 Hb_011457_170--Hb_004453_140 Hb_005000_290 Hb_005000_290 Hb_011457_170--Hb_005000_290 Hb_011457_170--Hb_000157_010 Hb_152439_020 Hb_152439_020 Hb_000157_010--Hb_152439_020 Hb_001153_220 Hb_001153_220 Hb_000157_010--Hb_001153_220 Hb_001856_020 Hb_001856_020 Hb_000157_010--Hb_001856_020 Hb_024952_010 Hb_024952_010 Hb_000157_010--Hb_024952_010 Hb_168501_010 Hb_168501_010 Hb_094744_010--Hb_168501_010 Hb_008066_040 Hb_008066_040 Hb_094744_010--Hb_008066_040 Hb_000012_230 Hb_000012_230 Hb_094744_010--Hb_000012_230 Hb_094744_010--Hb_011457_170 Hb_001935_030 Hb_001935_030 Hb_094744_010--Hb_001935_030 Hb_005614_050 Hb_005614_050 Hb_006594_020--Hb_005614_050 Hb_007161_010 Hb_007161_010 Hb_006594_020--Hb_007161_010 Hb_001232_130 Hb_001232_130 Hb_006594_020--Hb_001232_130 Hb_017434_050 Hb_017434_050 Hb_006594_020--Hb_017434_050 Hb_000380_020 Hb_000380_020 Hb_006594_020--Hb_000380_020 Hb_019654_090 Hb_019654_090 Hb_006594_020--Hb_019654_090 Hb_010589_040--Hb_001946_320 Hb_000861_040 Hb_000861_040 Hb_010589_040--Hb_000861_040 Hb_015934_020 Hb_015934_020 Hb_010589_040--Hb_015934_020 Hb_012522_030 Hb_012522_030 Hb_010589_040--Hb_012522_030 Hb_002307_090 Hb_002307_090 Hb_010589_040--Hb_002307_090 Hb_002291_030 Hb_002291_030 Hb_010589_040--Hb_002291_030 Hb_002983_030 Hb_002983_030 Hb_004453_140--Hb_002983_030 Hb_004453_140--Hb_015934_020 Hb_000193_240 Hb_000193_240 Hb_004453_140--Hb_000193_240 Hb_000329_600 Hb_000329_600 Hb_004453_140--Hb_000329_600 Hb_001143_090 Hb_001143_090 Hb_004453_140--Hb_001143_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
136.48 12.4688 2.22186 59.4925 131.555 140.544
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
127.576 374.061 455.41 58.4387 5.65782

CAGE analysis