Hb_089839_020

Information

Type -
Description -
Location Contig89839: 24031-26518
Sequence    

Annotation

kegg
ID sbi:SORBI_06g004770
description SORBIDRAFT_06g004770, Sb06g004770; hypothetical protein
nr
ID XP_006373483.1
description hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
swissprot
ID Q08069
description 40S ribosomal protein S8 OS=Zea mays GN=RPS8 PE=2 SV=2
trembl
ID J3LWX9
description 40S ribosomal protein S8 OS=Oryza brachyantha GN=OB04G16540 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 40s ribosomal protein s8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_61804: 24006-26493
cDNA
(Sanger)
(ID:Location)		 016_P21.ab1: 24320-26486 , 050_E19.ab1: 24324-26493

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_089839_020 0.0 - - hypothetical protein POPTR_0017s14180g [Populus trichocarpa]
2 Hb_003734_140 0.0566039117 - - conserved hypothetical protein [Ricinus communis]
3 Hb_002713_070 0.0647426983 - - hypothetical protein POPTR_0002s21620g [Populus trichocarpa]
4 Hb_000227_230 0.0680335227 - - PREDICTED: putative methyltransferase C9orf114 [Jatropha curcas]
5 Hb_000580_080 0.0689034327 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
6 Hb_002925_030 0.076175747 - - 40S ribosomal protein S16B [Hevea brasiliensis]
7 Hb_000136_170 0.0792855786 - - PREDICTED: uncharacterized protein LOC105645501 [Jatropha curcas]
8 Hb_004375_100 0.079831601 - - PREDICTED: 60S ribosomal protein L19-1 [Jatropha curcas]
9 Hb_005618_140 0.0820743326 - - PREDICTED: uncharacterized protein LOC105642706 [Jatropha curcas]
10 Hb_003398_120 0.0837156834 - - PREDICTED: uncharacterized protein LOC105641067 [Jatropha curcas]
11 Hb_001998_050 0.0854903237 - - PREDICTED: alpha N-terminal protein methyltransferase 1 [Jatropha curcas]
12 Hb_001505_020 0.0870501883 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 9 [Jatropha curcas]
13 Hb_001433_050 0.0876568417 - - 60S ribosomal protein L18, putative [Ricinus communis]
14 Hb_005701_020 0.0888683131 transcription factor TF Family: Orphans PREDICTED: B-box zinc finger protein 21 [Jatropha curcas]
15 Hb_003623_050 0.0889555084 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000340_140 0.0899112301 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
17 Hb_001818_020 0.0900455107 - - PREDICTED: 60S ribosomal protein L21-1 [Phoenix dactylifera]
18 Hb_002375_090 0.0917564121 - - -
19 Hb_002701_240 0.0923423626 - - PREDICTED: putative DNA helicase INO80 [Jatropha curcas]
20 Hb_000380_190 0.0929792454 - - PREDICTED: exosome complex component MTR3 [Jatropha curcas]

Gene co-expression network

sample Hb_089839_020 Hb_089839_020 Hb_003734_140 Hb_003734_140 Hb_089839_020--Hb_003734_140 Hb_002713_070 Hb_002713_070 Hb_089839_020--Hb_002713_070 Hb_000227_230 Hb_000227_230 Hb_089839_020--Hb_000227_230 Hb_000580_080 Hb_000580_080 Hb_089839_020--Hb_000580_080 Hb_002925_030 Hb_002925_030 Hb_089839_020--Hb_002925_030 Hb_000136_170 Hb_000136_170 Hb_089839_020--Hb_000136_170 Hb_003734_140--Hb_002925_030 Hb_003734_140--Hb_002713_070 Hb_003734_140--Hb_000227_230 Hb_001505_020 Hb_001505_020 Hb_003734_140--Hb_001505_020 Hb_004375_100 Hb_004375_100 Hb_003734_140--Hb_004375_100 Hb_002713_070--Hb_000136_170 Hb_002660_030 Hb_002660_030 Hb_002713_070--Hb_002660_030 Hb_002713_070--Hb_004375_100 Hb_002713_070--Hb_001505_020 Hb_002713_070--Hb_002925_030 Hb_001998_050 Hb_001998_050 Hb_000227_230--Hb_001998_050 Hb_000227_230--Hb_002925_030 Hb_003398_120 Hb_003398_120 Hb_000227_230--Hb_003398_120 Hb_000227_230--Hb_001505_020 Hb_000380_190 Hb_000380_190 Hb_000227_230--Hb_000380_190 Hb_000465_060 Hb_000465_060 Hb_000580_080--Hb_000465_060 Hb_001824_070 Hb_001824_070 Hb_000580_080--Hb_001824_070 Hb_001584_070 Hb_001584_070 Hb_000580_080--Hb_001584_070 Hb_001235_210 Hb_001235_210 Hb_000580_080--Hb_001235_210 Hb_001477_110 Hb_001477_110 Hb_000580_080--Hb_001477_110 Hb_002925_030--Hb_003398_120 Hb_002925_030--Hb_001998_050 Hb_001863_090 Hb_001863_090 Hb_002925_030--Hb_001863_090 Hb_011311_010 Hb_011311_010 Hb_002925_030--Hb_011311_010 Hb_000134_070 Hb_000134_070 Hb_000136_170--Hb_000134_070 Hb_000136_170--Hb_001505_020 Hb_003623_050 Hb_003623_050 Hb_000136_170--Hb_003623_050 Hb_000265_050 Hb_000265_050 Hb_000136_170--Hb_000265_050 Hb_004567_120 Hb_004567_120 Hb_000136_170--Hb_004567_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
235.364 106.85 69.0512 113.73 272.789 339.718
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
431.39 861.77 343.759 220.851 128.417

CAGE analysis