Hb_115045_010

Information

Type -
Description -
Location Contig115045: 1394-2144
Sequence    

Annotation

kegg
ID rcu:RCOM_1077610
description ATP binding protein, putative (EC:3.1.26.3)
nr
ID XP_002514810.1
description ATP binding protein, putative [Ricinus communis]
swissprot
ID Q3EBC8
description Endoribonuclease Dicer homolog 2 OS=Arabidopsis thaliana GN=At3g03300 PE=1 SV=2
trembl
ID B9RM41
description ATP binding protein, putative OS=Ricinus communis GN=RCOM_1077610 PE=4 SV=1
Gene Ontology
ID GO:0003723
description dicer-like protein isoform partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_115045_010 0.0 - - ATP binding protein, putative [Ricinus communis]
2 Hb_005601_050 0.17515727 - - PREDICTED: uncharacterized protein LOC103444007 [Malus domestica]
3 Hb_005016_070 0.2061179308 - - -
4 Hb_001032_030 0.23440998 - - PREDICTED: 60S ribosomal protein L23a-like [Eucalyptus grandis]
5 Hb_000589_230 0.2463834854 - - unknown [Picea sitchensis]
6 Hb_081815_010 0.2466681692 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
7 Hb_001418_060 0.2478148484 - - -
8 Hb_001385_090 0.2630721262 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
9 Hb_060054_010 0.2729518869 - - NADH-ubiquinone oxidoreductase subunit B17.2, putative [Ricinus communis]
10 Hb_011781_040 0.2846638844 - - -
11 Hb_002204_040 0.2866665814 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
12 Hb_037497_010 0.2992431234 - - PREDICTED: choline transporter-like protein 2 isoform X1 [Populus euphratica]
13 Hb_002291_040 0.3000671325 - - hypothetical protein VITISV_030841 [Vitis vinifera]
14 Hb_001762_070 0.3060692597 - - -
15 Hb_000291_130 0.3064426784 - - -
16 Hb_001231_070 0.3075614781 - - -
17 Hb_001385_080 0.3130271612 - - -
18 Hb_000130_170 0.3136932787 - - -
19 Hb_005839_010 0.3165186799 - - 30S ribosomal protein s13 [Camellia sinensis]
20 Hb_106873_020 0.3232589102 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]

Gene co-expression network

sample Hb_115045_010 Hb_115045_010 Hb_005601_050 Hb_005601_050 Hb_115045_010--Hb_005601_050 Hb_005016_070 Hb_005016_070 Hb_115045_010--Hb_005016_070 Hb_001032_030 Hb_001032_030 Hb_115045_010--Hb_001032_030 Hb_000589_230 Hb_000589_230 Hb_115045_010--Hb_000589_230 Hb_081815_010 Hb_081815_010 Hb_115045_010--Hb_081815_010 Hb_001418_060 Hb_001418_060 Hb_115045_010--Hb_001418_060 Hb_101705_020 Hb_101705_020 Hb_005601_050--Hb_101705_020 Hb_005601_050--Hb_005016_070 Hb_037497_010 Hb_037497_010 Hb_005601_050--Hb_037497_010 Hb_005741_010 Hb_005741_010 Hb_005601_050--Hb_005741_010 Hb_004458_050 Hb_004458_050 Hb_005601_050--Hb_004458_050 Hb_001385_090 Hb_001385_090 Hb_005016_070--Hb_001385_090 Hb_001762_070 Hb_001762_070 Hb_005016_070--Hb_001762_070 Hb_003927_150 Hb_003927_150 Hb_005016_070--Hb_003927_150 Hb_005016_070--Hb_001418_060 Hb_059952_010 Hb_059952_010 Hb_005016_070--Hb_059952_010 Hb_017895_010 Hb_017895_010 Hb_001032_030--Hb_017895_010 Hb_011781_040 Hb_011781_040 Hb_001032_030--Hb_011781_040 Hb_000907_040 Hb_000907_040 Hb_001032_030--Hb_000907_040 Hb_002540_040 Hb_002540_040 Hb_001032_030--Hb_002540_040 Hb_094437_010 Hb_094437_010 Hb_001032_030--Hb_094437_010 Hb_060054_010 Hb_060054_010 Hb_000589_230--Hb_060054_010 Hb_106873_020 Hb_106873_020 Hb_000589_230--Hb_106873_020 Hb_003025_060 Hb_003025_060 Hb_000589_230--Hb_003025_060 Hb_000589_230--Hb_081815_010 Hb_000589_230--Hb_001418_060 Hb_163132_010 Hb_163132_010 Hb_081815_010--Hb_163132_010 Hb_007356_010 Hb_007356_010 Hb_081815_010--Hb_007356_010 Hb_007290_020 Hb_007290_020 Hb_081815_010--Hb_007290_020 Hb_068804_060 Hb_068804_060 Hb_081815_010--Hb_068804_060 Hb_005723_070 Hb_005723_070 Hb_081815_010--Hb_005723_070 Hb_000300_140 Hb_000300_140 Hb_081815_010--Hb_000300_140 Hb_001418_060--Hb_001385_090 Hb_130134_020 Hb_130134_020 Hb_001418_060--Hb_130134_020 Hb_001418_060--Hb_060054_010 Hb_074979_030 Hb_074979_030 Hb_001418_060--Hb_074979_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.82017 0 0.453439 2.93508 0.0920774 9.69293
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis