Gene annotation
Transcriptome id Sobic.001G528000.1
Synonym Sb01g049130, ATSYP52, SYP52
Functional annotation SNARE domain containing protein, putative, expressed
UniProt C5X0X0
Pfam PF05739
Panther DB PTHR19957 PTHR19957:SF109
NCBI CDD KOG3202; SNARE protein TLG1/Syntaxin 6
KEGG Orthology K08503; syntaxin of plants SYP5
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT1G79590 : syntaxin of plants 52
RAP-DB (Rice) LOC_Os02g02720.3 : SNARE domain containing protein, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G267950 - -
2 Sobic.005G199500 OsFBL58 - F-box domain and LRR containing protein, expressed -
3 Sobic.007G075200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bifunctional purine biosynthesis protein purH, putative, expressed K00602: phosphoribosylaminoimidazolecarboxamide formyltransferase / IMP cyclohydrolase
4 Sobic.006G261000 cytochrome P450, putative, expressed -
5 Sobic.006G018500 - -
6 Sobic.003G049100 prolyl 4-hydroxylase, putative, expressed K00472: prolyl 4-hydroxylase
7 Sobic.007G005800 OsFBL38 - F-box domain and LRR containing protein, expressed -
8 Sobic.001G497750 - -
9 Sobic.001G493300 glycerol-3-phosphate acyltransferase, putative, expressed -
10 Sobic.002G035766 - -
11 Sobic.001G220066 - -
12 Sobic.008G192200 - -
13 Sobic.001G530650 - -
14 Sobic.004G196000 late embryogenesis abundant protein D-34, putative, expressed -
15 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
16 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
17 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
18 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
19 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -
20 Sobic.001G272300 OsFBX356 - F-box domain containing protein, expressed -


Gene co-expression network
sample Sobic001G528000 Sobic001G528000 Sobic001G267950 Sobic001G267950 Sobic001G528000--Sobic001G267950 Sobic005G199500 Sobic005G199500 Sobic001G528000--Sobic005G199500 Sobic007G075200 Sobic007G075200 Sobic001G528000--Sobic007G075200 Sobic006G261000 Sobic006G261000 Sobic001G528000--Sobic006G261000 Sobic006G018500 Sobic006G018500 Sobic001G528000--Sobic006G018500 Sobic003G049100 Sobic003G049100 Sobic001G528000--Sobic003G049100 Sobic007G005800 Sobic007G005800 Sobic001G528000--Sobic007G005800 Sobic001G497750 Sobic001G497750 Sobic001G528000--Sobic001G497750 Sobic001G493300 Sobic001G493300 Sobic001G528000--Sobic001G493300 Sobic001G267950--Sobic005G199500 Sobic002G069601 Sobic002G069601 Sobic001G267950--Sobic002G069601 Sobic001G267950--Sobic006G018500 Sobic003G353050 Sobic003G353050 Sobic001G267950--Sobic003G353050 Sobic001G267950--Sobic007G075200 Sobic003G318400 Sobic003G318400 Sobic001G267950--Sobic003G318400 Sobic009G214700 Sobic009G214700 Sobic001G267950--Sobic009G214700 Sobic008G192200 Sobic008G192200 Sobic001G267950--Sobic008G192200 Sobic001G267950--Sobic003G049100 Sobic005G199500--Sobic006G018500 Sobic007G069750 Sobic007G069750 Sobic005G199500--Sobic007G069750 Sobic002G213050 Sobic002G213050 Sobic005G199500--Sobic002G213050 Sobic005G199500--Sobic001G267950 Sobic001G418300 Sobic001G418300 Sobic005G199500--Sobic001G418300 Sobic010G129900 Sobic010G129900 Sobic005G199500--Sobic010G129900 Sobic005G199500--Sobic006G261000 Sobic005G199500--Sobic009G214700 Sobic005G199500--Sobic007G075200 Sobic007G075200--Sobic006G261000 Sobic007G075200--Sobic009G214700 Sobic007G075200--Sobic008G192200 Sobic003G091100 Sobic003G091100 Sobic007G075200--Sobic003G091100 SobicK042700 SobicK042700 Sobic007G075200--SobicK042700 Sobic001G272300 Sobic001G272300 Sobic007G075200--Sobic001G272300 Sobic006G261000--Sobic007G075200 Sobic006G261000--Sobic009G214700 Sobic006G261000--Sobic006G018500 Sobic003G241400 Sobic003G241400 Sobic006G261000--Sobic003G241400 Sobic003G389500 Sobic003G389500 Sobic006G261000--Sobic003G389500 Sobic004G196000 Sobic004G196000 Sobic006G261000--Sobic004G196000 Sobic006G261000--Sobic001G267950 Sobic006G261000--Sobic005G199500 Sobic006G261000--Sobic002G213050 Sobic006G018500--Sobic005G199500 Sobic006G018500--Sobic002G213050 Sobic006G018500--Sobic001G267950 Sobic006G018500--Sobic006G261000 Sobic006G018500--Sobic007G075200 Sobic006G018500--Sobic001G418300 Sobic006G018500--Sobic007G069750 Sobic001G472900 Sobic001G472900 Sobic006G018500--Sobic001G472900 Sobic006G018500--Sobic009G214700 Sobic001G218701 Sobic001G218701 Sobic003G049100--Sobic001G218701 Sobic002G081000 Sobic002G081000 Sobic003G049100--Sobic002G081000 Sobic003G058400 Sobic003G058400 Sobic003G049100--Sobic003G058400 Sobic003G049100--Sobic008G192200 Sobic003G049100--Sobic001G272300 Sobic007G005800--Sobic001G497750 Sobic001G530650 Sobic001G530650 Sobic007G005800--Sobic001G530650 Sobic007G005800--Sobic001G272300 Sobic001G497750--Sobic001G530650 Sobic001G497750--Sobic007G005800 Sobic001G497750--Sobic001G272300 Sobic001G493300--Sobic008G192200 Sobic001G493300--Sobic001G272300
Octagon: transcription factors


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