Gene annotation
| Transcriptome id | Sobic.002G232300.1 |
|---|---|
| Synonym | Sb02g027150, SbSAUR11, small auxin up RNA |
| Functional annotation | "domain confirmed by Pfam database, expression not supported" (PubMedID : 20499123) OsSAUR15 - Auxin-responsive SAUR gene family member |
| UniProt | C5X309 |
| Pfam | PF02519 |
| Panther DB | PTHR31374 PTHR31374:SF50 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | GO:0009733; response to auxin |
Orthologs (automatic annotation)
| TAIR | AT1G56150 : SAUR-like auxin-responsive protein family |
|---|---|
| RAP-DB (Rice) | LOC_Os03g45830.1 : OsSAUR15 - Auxin-responsive SAUR gene family member |
| MaizeGDB (Corn) | - |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G351000 | - | - |
| 2 | Sobic.004G230000 | expressed protein | - |
| 3 | Sobic.004G230000 | expressed protein | - |
| 4 | Sobic.004G230000 | expressed protein | - |
| 5 | Sobic.004G230000 | expressed protein | - |
| 6 | Sobic.004G230000 | expressed protein | - |
| 7 | Sobic.004G230000 | expressed protein | - |
| 8 | Sobic.004G230000 | expressed protein | - |
| 9 | Sobic.004G230000 | expressed protein | - |
| 10 | Sobic.003G344501 | - | - |
| 11 | Sobic.006G061500 | ulp1 protease family protein, putative, expressed | - |
| 12 | Sobic.002G125400 | - | - |
| 13 | Sobic.003G069300 | transferase family protein, putative, expressed | - |
| 14 | Sobic.005G199151 | - | - |
| 15 | Sobic.003G081200 | expressed protein | - |
| 16 | Sobic.001G343700 | SWIM zinc finger family protein, putative, expressed | - |
| 17 | Sobic.008G029000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@WRKY40, expressed | - |
| 18 | Sobic.005G187800 | - | - |
| 19 | Sobic.009G147450 | - | - |
| 20 | Sobic.005G081200 | DEFL33 - Defensin and Defensin-like DEFL family, expressed | - |
Gene co-expression network
Octagon: transcription factors
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