Gene annotation
Transcriptome id Sobic.002G240300.1
Synonym Sb02g027780
Functional annotation expressed protein
UniProt A0A1B6QD68
Pfam PF10354
Panther DB PTHR11538 PTHR11538:SF43
NCBI CDD KOG4174; Uncharacterized conserved protein
KEGG Orthology K19307; 25S rRNA (uracil2634-N3)-methyltransferase
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT1G55790 : Domain of unknown function (DUF2431)
RAP-DB (Rice) LOC_Os09g30210.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium -
Barley HORVU5Hr1G071480.3 , HORVU5Hr1G071480.2 , HORVU5Hr1G071480.1 , HORVU5Hr1G071370.1 , HORVU5Hr1G071450.1
Wheat TraesCS5D02G262900 , TraesCS5A02G255700 , TraesCS5A02G255000 , TraesCS5D02G263400 , TraesCS5D02G263100 , TraesCS5B02G254500 , TraesCS5B02G253900 , TraesCS5D02G263700 , TraesCS5B02G254200 , TraesCS5B02G254100 , TraesCS5B02G254300 , TraesCS5B02G254900
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.006G210600 expressed protein -
2 Sobic.006G155400 expressed protein -
3 Sobic.005G150250 - -
4 Sobic.006G222200 MBTB7 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
5 Sobic.001G221750 - -
6 Sobic.003G149700 FAD dependent oxidoreductase domain containing protein, expressed K00306: sarcosine oxidase / L-pipecolate oxidase
7 Sobic.002G033100 GDSL-like lipase/acylhydrolase, putative, expressed -
8 Sobic.003G356500 "uncharacterized lipid transporters, up-regulated under drought stress, mapped into a QTL involved in pre-flowering drought tolerance (QSTG2_4)"(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@LTPL101 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
9 Sobic.001G112300 OsCam3 - Calmodulin, expressed K02183: calmodulin
10 Sobic.003G193900 - -
11 Sobic.009G022600 - -
12 Sobic.001G005100 lipid binding protein, putative, expressed -
13 Sobic.002G132201 - -
14 Sobic.001G468900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@DUF623 domain containing protein, expressed -
15 Sobic.004G037401 - -
16 Sobic.003G059500 verticillium wilt disease resistance protein, putative, expressed -
17 Sobic.003G278800 lipase, putative, expressed -
18 Sobic.005G073300 limonoid UDP-glucosyltransferase, putative, expressed -
19 Sobic.004G089801 - -
20 Sobic.010G000401 - -


Gene co-expression network
sample Sobic002G240300 Sobic002G240300 Sobic006G210600 Sobic006G210600 Sobic002G240300--Sobic006G210600 Sobic006G155400 Sobic006G155400 Sobic002G240300--Sobic006G155400 Sobic005G150250 Sobic005G150250 Sobic002G240300--Sobic005G150250 Sobic006G222200 Sobic006G222200 Sobic002G240300--Sobic006G222200 Sobic001G221750 Sobic001G221750 Sobic002G240300--Sobic001G221750 Sobic003G149700 Sobic003G149700 Sobic002G240300--Sobic003G149700 Sobic002G033100 Sobic002G033100 Sobic002G240300--Sobic002G033100 Sobic003G356500 Sobic003G356500 Sobic002G240300--Sobic003G356500 Sobic001G112300 Sobic001G112300 Sobic002G240300--Sobic001G112300 Sobic006G210600--Sobic002G240300 Sobic006G210600--Sobic006G155400 Sobic006G210600--Sobic005G150250 Sobic002G132201 Sobic002G132201 Sobic006G210600--Sobic002G132201 Sobic009G022600 Sobic009G022600 Sobic006G210600--Sobic009G022600 Sobic005G073300 Sobic005G073300 Sobic006G210600--Sobic005G073300 Sobic006G210600--Sobic003G149700 Sobic002G054800 Sobic002G054800 Sobic006G210600--Sobic002G054800 Sobic010G215201 Sobic010G215201 Sobic006G210600--Sobic010G215201 Sobic006G155400--Sobic005G150250 Sobic006G155400--Sobic003G149700 Sobic006G155400--Sobic009G022600 Sobic006G155400--Sobic002G132201 Sobic006G155400--Sobic006G222200 Sobic006G155400--Sobic003G356500 Sobic003G193900 Sobic003G193900 Sobic006G155400--Sobic003G193900 Sobic006G155400--Sobic006G210600 Sobic006G155400--Sobic005G073300 Sobic005G150250--Sobic006G155400 Sobic005G150250--Sobic003G149700 Sobic005G150250--Sobic006G222200 Sobic005G150250--Sobic002G132201 Sobic005G150250--Sobic003G356500 Sobic005G150250--Sobic009G022600 Sobic005G150250--Sobic003G193900 Sobic005G150250--Sobic005G073300 Sobic005G150250--Sobic006G210600 Sobic006G222200--Sobic001G221750 Sobic006G222200--Sobic005G150250 Sobic006G222200--Sobic002G033100 Sobic006G222200--Sobic006G155400 Sobic001G005100 Sobic001G005100 Sobic006G222200--Sobic001G005100 Sobic010G129900 Sobic010G129900 Sobic006G222200--Sobic010G129900 Sobic006G222200--Sobic001G112300 Sobic001G084133 Sobic001G084133 Sobic006G222200--Sobic001G084133 Sobic003G245000 Sobic003G245000 Sobic006G222200--Sobic003G245000 Sobic001G221750--Sobic006G222200 Sobic001G221750--Sobic002G033100 Sobic001G221750--Sobic010G129900 Sobic001G221750--Sobic001G112300 Sobic001G221750--Sobic006G155400 Sobic001G221750--Sobic001G005100 Sobic001G221750--Sobic005G150250 Sobic007G069750 Sobic007G069750 Sobic001G221750--Sobic007G069750 Sobic002G237400 Sobic002G237400 Sobic001G221750--Sobic002G237400 Sobic003G149700--Sobic002G132201 Sobic003G149700--Sobic005G150250 Sobic003G149700--Sobic005G073300 Sobic003G149700--Sobic009G022600 Sobic003G149700--Sobic006G155400 Sobic003G149700--Sobic002G054800 Sobic001G071500 Sobic001G071500 Sobic003G149700--Sobic001G071500 Sobic003G149700--Sobic003G356500 Sobic003G149700--Sobic003G193900 Sobic002G033100--Sobic006G222200 Sobic002G033100--Sobic001G005100 Sobic002G033100--Sobic001G221750 Sobic002G033100--Sobic005G150250 Sobic002G033100--Sobic002G237400 Sobic002G033100--Sobic006G155400 Sobic003G278800 Sobic003G278800 Sobic002G033100--Sobic003G278800 Sobic002G033100--Sobic001G084133 Sobic004G089801 Sobic004G089801 Sobic002G033100--Sobic004G089801 Sobic003G356500--Sobic003G149700 Sobic003G356500--Sobic005G150250 Sobic003G356500--Sobic006G155400 Sobic003G356500--Sobic002G132201 Sobic003G356500--Sobic009G022600 Sobic001G468900 Sobic001G468900 Sobic003G356500--Sobic001G468900 Sobic003G356500--Sobic003G193900 Sobic003G059500 Sobic003G059500 Sobic003G356500--Sobic003G059500 Sobic003G356500--Sobic004G089801 Sobic001G112300--Sobic007G069750 Sobic001G112300--Sobic010G129900 Sobic002G213050 Sobic002G213050 Sobic001G112300--Sobic002G213050 Sobic001G112300--Sobic002G237400 Sobic004G055400 Sobic004G055400 Sobic001G112300--Sobic004G055400 Sobic009G127201 Sobic009G127201 Sobic001G112300--Sobic009G127201 Sobic001G472900 Sobic001G472900 Sobic001G112300--Sobic001G472900 Sobic002G269700 Sobic002G269700 Sobic001G112300--Sobic002G269700 Sobic001G112300--Sobic003G278800
Octagon: transcription factors


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