Gene annotation
Transcriptome id Sobic.003G419100.1
Synonym PVA12, Sb03g045240
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
MSP domain containing protein, putative, expressed
UniProt C5XHP5
Pfam PF00635
Panther DB PTHR10809 PTHR10809:SF45
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005789; endoplasmic reticulum membrane


Orthologs (automatic annotation)
TAIR AT1G08820 : vamp/synaptobrevin-associated protein 27-2
RAP-DB (Rice) LOC_Os01g71050.1 : MSP domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a014053 , Zm00025a011538 , Zm00025a039175 , Zm00025a028900 , Zm00025a026095 , Zm00025a037656
Brachypodium KQK11425 , KQK11424 , KQK11423
Barley -
Wheat -
Populus -


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cDNA sequences
Sobic.003G419100


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G263151 - -
2 Sobic.006G196800 OsFBX177 - F-box domain containing protein, expressed -
3 Sobic.003G267400 MYB family transcription factor, putative, expressed K09422: transcription factor MYB, plant
4 Sobic.008G060400 - -
5 Sobic.010G165925 - -
6 Sobic.001G209000 secretory protein, putative, expressed -
7 Sobic.003G188700 expressed protein -
8 Sobic.007G003250 - -
9 Sobic.001G355850 - -
10 Sobic.006G007700 CAS1 domain-containing protein 1 precursor, putative, expressed -
11 Sobic.001G369701 - -
12 Sobic.003G008400 acetyltransferase, GNAT family protein, expressed -
13 Sobic.003G254400 expressed protein -
14 Sobic.007G203600 transferase family protein, putative, expressed -
15 Sobic.006G089601 - -
16 Sobic.003G318600 - -
17 Sobic.005G057500 Leucine Rich Repeat family protein, expressed -
18 Sobic.007G191150 - -
19 Sobic.003G199650 - -
20 Sobic.003G360500 glycosyl transferase, putative, expressed K00750: GYG1, glycogenin


Gene co-expression network
sample Sobic003G419100 Sobic003G419100 Sobic010G263151 Sobic010G263151 Sobic003G419100--Sobic010G263151 Sobic006G196800 Sobic006G196800 Sobic003G419100--Sobic006G196800 Sobic003G267400 Sobic003G267400 Sobic003G419100--Sobic003G267400 Sobic008G060400 Sobic008G060400 Sobic003G419100--Sobic008G060400 Sobic010G165925 Sobic010G165925 Sobic003G419100--Sobic010G165925 Sobic001G209000 Sobic001G209000 Sobic003G419100--Sobic001G209000 Sobic003G188700 Sobic003G188700 Sobic003G419100--Sobic003G188700 Sobic007G003250 Sobic007G003250 Sobic003G419100--Sobic007G003250 Sobic001G355850 Sobic001G355850 Sobic003G419100--Sobic001G355850 Sobic010G263151--Sobic006G196800 Sobic010G263151--Sobic003G267400 Sobic010G263151--Sobic003G188700 Sobic010G263151--Sobic003G419100 Sobic010G263151--Sobic001G209000 Sobic010G263151--Sobic010G165925 Sobic006G007700 Sobic006G007700 Sobic010G263151--Sobic006G007700 Sobic010G263151--Sobic001G355850 Sobic007G203600 Sobic007G203600 Sobic010G263151--Sobic007G203600 Sobic006G196800--Sobic010G263151 Sobic006G196800--Sobic010G165925 Sobic006G196800--Sobic007G003250 Sobic001G369701 Sobic001G369701 Sobic006G196800--Sobic001G369701 Sobic006G196800--Sobic003G188700 Sobic006G196800--Sobic003G267400 Sobic006G196800--Sobic006G007700 Sobic006G196800--Sobic003G419100 Sobic002G142550 Sobic002G142550 Sobic006G196800--Sobic002G142550 Sobic003G267400--Sobic010G263151 Sobic003G267400--Sobic006G196800 Sobic003G267400--Sobic001G209000 Sobic003G267400--Sobic003G188700 Sobic003G267400--Sobic010G165925 Sobic003G267400--Sobic003G419100 Sobic003G267400--Sobic007G203600 Sobic003G267400--Sobic007G003250 Sobic003G267400--Sobic006G007700 Sobic008G060400--Sobic003G419100 Sobic008G060400--Sobic010G263151 Sobic001G413400 Sobic001G413400 Sobic008G060400--Sobic001G413400 Sobic008G060400--Sobic001G355850 Sobic008G060400--Sobic001G209000 Sobic008G060400--Sobic006G196800 Sobic003G254400 Sobic003G254400 Sobic008G060400--Sobic003G254400 Sobic003G008400 Sobic003G008400 Sobic008G060400--Sobic003G008400 Sobic008G060400--Sobic003G267400 Sobic010G165925--Sobic007G003250 Sobic010G165925--Sobic001G369701 Sobic005G107250 Sobic005G107250 Sobic010G165925--Sobic005G107250 Sobic010G165925--Sobic002G142550 Sobic010G165925--Sobic006G196800 Sobic003G025500 Sobic003G025500 Sobic010G165925--Sobic003G025500 Sobic001G115200 Sobic001G115200 Sobic010G165925--Sobic001G115200 Sobic010G180300 Sobic010G180300 Sobic010G165925--Sobic010G180300 Sobic010G165925--Sobic010G263151 Sobic001G209000--Sobic010G263151 Sobic001G209000--Sobic003G267400 Sobic001G209000--Sobic001G355850 Sobic001G209000--Sobic006G196800 Sobic001G209000--Sobic003G419100 Sobic001G209000--Sobic003G188700 Sobic001G209000--Sobic003G008400 Sobic001G209000--Sobic003G254400 Sobic003G318600 Sobic003G318600 Sobic001G209000--Sobic003G318600 Sobic003G188700--Sobic010G263151 Sobic003G188700--Sobic006G196800 Sobic003G188700--Sobic010G165925 Sobic003G188700--Sobic007G003250 Sobic003G188700--Sobic003G267400 Sobic003G188700--Sobic001G369701 Sobic003G188700--Sobic006G007700 Sobic003G188700--Sobic003G419100 Sobic003G188700--Sobic001G209000 Sobic007G003250--Sobic010G165925 Sobic007G003250--Sobic001G369701 Sobic007G003250--Sobic005G107250 Sobic007G003250--Sobic002G142550 Sobic007G003250--Sobic003G025500 Sobic007G003250--Sobic006G196800 Sobic007G003250--Sobic001G115200 Sobic007G003250--Sobic010G180300 Sobic007G003250--Sobic010G263151 Sobic001G355850--Sobic010G263151 Sobic001G355850--Sobic001G209000 Sobic001G355850--Sobic006G196800 Sobic001G355850--Sobic003G254400 Sobic001G355850--Sobic003G008400 Sobic001G355850--Sobic003G267400 Sobic001G355850--Sobic003G318600 Sobic001G355850--Sobic003G419100 Sobic001G355850--Sobic008G060400
Octagon: transcription factors


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