Gene annotation
Transcriptome id Sobic.004G103901.1
Synonym -
Functional annotation -
UniProt A0A1Z5RM73
Pfam PF08031
Panther DB PTHR32448 PTHR32448:SF31
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016491; oxidoreductase activity


Orthologs (automatic annotation)
TAIR AT4G20860 : FAD-binding Berberine family protein
RAP-DB (Rice) LOC_Os02g14090.1 : berberine and berberine like domain containing protein, expressed
MaizeGDB (Corn) Zm00025a020032
Brachypodium -
Barley -
Wheat -
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.005G170300 OsFBDUF56 - F-box and DUF domain containing protein, expressed -
2 Sobic.008G103250 - -
3 Sobic.010G124900 oxidoreductase, short chain dehydrogenase/reductase family, putative, expressed K10251: HSD17B12, KAR, 17beta-estradiol 17-dehydrogenase / very-long-chain 3-oxoacyl-CoA reductase
4 Sobic.005G187600 - -
5 Sobic.006G204400 maltose excess protein 1-like, chloroplast precursor, putative, expressed -
6 Sobic.001G094700 expressed protein -
7 Sobic.001G094700 expressed protein -
8 Sobic.001G094700 expressed protein -
9 Sobic.001G094700 expressed protein -
10 Sobic.001G094700 expressed protein -
11 Sobic.001G094700 expressed protein -
12 Sobic.001G094700 expressed protein -
13 Sobic.001G094700 expressed protein -
14 Sobic.001G094700 expressed protein -
15 Sobic.001G094700 expressed protein -
16 Sobic.001G094700 expressed protein -
17 Sobic.001G094700 expressed protein -
18 Sobic.001G094700 expressed protein -
19 Sobic.001G094700 expressed protein -
20 Sobic.001G094700 expressed protein -


Gene co-expression network
sample Sobic004G103901 Sobic004G103901 Sobic005G170300 Sobic005G170300 Sobic004G103901--Sobic005G170300 Sobic008G103250 Sobic008G103250 Sobic004G103901--Sobic008G103250 Sobic010G124900 Sobic010G124900 Sobic004G103901--Sobic010G124900 Sobic005G187600 Sobic005G187600 Sobic004G103901--Sobic005G187600 Sobic006G204400 Sobic006G204400 Sobic004G103901--Sobic006G204400 Sobic001G094700 Sobic001G094700 Sobic004G103901--Sobic001G094700 Sobic005G170300--Sobic008G103250 Sobic005G170300--Sobic004G103901 Sobic005G170300--Sobic001G094700 Sobic008G103250--Sobic005G170300 Sobic008G103250--Sobic001G094700 Sobic002G111100 Sobic002G111100 Sobic010G124900--Sobic002G111100 Sobic001G106800 Sobic001G106800 Sobic010G124900--Sobic001G106800 Sobic010G124900--Sobic006G204400 Sobic010G124900--Sobic008G103250 Sobic001G167600 Sobic001G167600 Sobic010G124900--Sobic001G167600 Sobic010G124900--Sobic005G170300 Sobic001G254000 Sobic001G254000 Sobic010G124900--Sobic001G254000 Sobic002G030300 Sobic002G030300 Sobic010G124900--Sobic002G030300 Sobic002G372000 Sobic002G372000 Sobic010G124900--Sobic002G372000 Sobic005G187600--Sobic001G094700 Sobic006G204400--Sobic001G106800 Sobic006G001100 Sobic006G001100 Sobic006G204400--Sobic006G001100 Sobic007G176900 Sobic007G176900 Sobic006G204400--Sobic007G176900 Sobic008G136601 Sobic008G136601 Sobic006G204400--Sobic008G136601 Sobic006G097400 Sobic006G097400 Sobic006G204400--Sobic006G097400 Sobic006G204400--Sobic002G111100 Sobic001G163666 Sobic001G163666 Sobic006G204400--Sobic001G163666 Sobic006G204400--Sobic008G103250 Sobic001G241401 Sobic001G241401 Sobic006G204400--Sobic001G241401 Sobic001G094700--Sobic001G094700
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.