Gene annotation
Transcriptome id Sobic.004G114200.1
Synonym Sb04g009330
Functional annotation zinc finger, C3HC4 type domain containing protein, expressed
UniProt C5XZG1
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF146
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT4G40070 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os02g15060.1 : zinc finger, C3HC4 type domain containing protein, expressed
MaizeGDB (Corn) Zm00025a019962 , Zm00025a050946
Brachypodium KQJ94241 , KQK06948 , KQJ95818 , KQJ95808
Barley HORVU6Hr1G017180.1 , HORVU5Hr1G074300.1
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G046801 - -
2 Sobic.004G163500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@RING-H2 finger protein, putative, expressed -
3 Sobic.004G187501 - -
4 Sobic.003G112500 expressed protein -
5 Sobic.002G125400 - -
6 Sobic.004G221200 - -
7 Sobic.001G331401 - -
8 Sobic.003G003300 expressed protein -
9 Sobic.002G028300 MBTB48 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed -
10 Sobic.003G069300 transferase family protein, putative, expressed -
11 Sobic.004G230000 expressed protein -
12 Sobic.004G230000 expressed protein -
13 Sobic.004G230000 expressed protein -
14 Sobic.004G230000 expressed protein -
15 Sobic.004G230000 expressed protein -
16 Sobic.004G230000 expressed protein -
17 Sobic.004G230000 expressed protein -
18 Sobic.004G230000 expressed protein -
19 Sobic.003G344501 - -
20 Sobic.006G061500 ulp1 protease family protein, putative, expressed -


Gene co-expression network
sample Sobic004G114200 Sobic004G114200 Sobic010G046801 Sobic010G046801 Sobic004G114200--Sobic010G046801 Sobic004G163500 Sobic004G163500 Sobic004G114200--Sobic004G163500 Sobic004G187501 Sobic004G187501 Sobic004G114200--Sobic004G187501 Sobic003G112500 Sobic003G112500 Sobic004G114200--Sobic003G112500 Sobic002G125400 Sobic002G125400 Sobic004G114200--Sobic002G125400 Sobic004G221200 Sobic004G221200 Sobic004G114200--Sobic004G221200 Sobic001G331401 Sobic001G331401 Sobic004G114200--Sobic001G331401 Sobic003G003300 Sobic003G003300 Sobic004G114200--Sobic003G003300 Sobic002G028300 Sobic002G028300 Sobic004G114200--Sobic002G028300 Sobic004G024350 Sobic004G024350 Sobic010G046801--Sobic004G024350 Sobic002G310400 Sobic002G310400 Sobic010G046801--Sobic002G310400 Sobic010G046801--Sobic004G187501 Sobic010G046801--Sobic002G125400 Sobic004G230000 Sobic004G230000 Sobic010G046801--Sobic004G230000 Sobic004G163500--Sobic003G112500 Sobic001G299200 Sobic001G299200 Sobic004G163500--Sobic001G299200 Sobic004G163500--Sobic010G046801 Sobic001G477200 Sobic001G477200 Sobic004G163500--Sobic001G477200 Sobic004G353650 Sobic004G353650 Sobic004G163500--Sobic004G353650 Sobic004G163500--Sobic004G114200 Sobic001G450400 Sobic001G450400 Sobic004G163500--Sobic001G450400 Sobic002G373900 Sobic002G373900 Sobic004G163500--Sobic002G373900 Sobic006G163501 Sobic006G163501 Sobic004G163500--Sobic006G163501 Sobic004G187501--Sobic001G331401 Sobic004G187501--Sobic004G024350 Sobic004G187501--Sobic004G230000 Sobic003G112500--Sobic006G163501 Sobic006G061500 Sobic006G061500 Sobic003G112500--Sobic006G061500 Sobic003G112500--Sobic004G230000 Sobic002G125400--Sobic004G230000 Sobic003G344501 Sobic003G344501 Sobic002G125400--Sobic003G344501 Sobic004G221200--Sobic002G125400 Sobic004G221200--Sobic006G061500 Sobic004G221200--Sobic003G344501 Sobic004G221200--Sobic004G230000 Sobic001G331401--Sobic004G187501 Sobic001G331401--Sobic004G024350 Sobic001G331401--Sobic002G310400 Sobic001G331401--Sobic002G028300 Sobic009G147450 Sobic009G147450 Sobic001G331401--Sobic009G147450 Sobic001G331401--Sobic004G230000 Sobic008G029000 Sobic008G029000 Sobic003G003300--Sobic008G029000 Sobic010G018200 Sobic010G018200 Sobic003G003300--Sobic010G018200 Sobic006G202900 Sobic006G202900 Sobic003G003300--Sobic006G202900 Sobic003G003300--Sobic004G230000 Sobic002G027401 Sobic002G027401 Sobic002G028300--Sobic002G027401 Sobic002G028300--Sobic004G230000
Octagon: transcription factors


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