Gene annotation
Transcriptome id Sobic.004G163500.3,Sobic.004G163500.1
Synonym Sb04g021520
Functional annotation SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence. (PubMedID : 27586543)
RING-H2 finger protein, putative, expressed
UniProt C5XTD2
Pfam PF13639
Panther DB PTHR14155 PTHR14155:SF169
NCBI CDD KOG4172; Predicted E3 ubiquitin ligase
KEGG Orthology -
Gene Ontology GO:0008270; zinc ion binding GO:0005515protein binding


Orthologs (automatic annotation)
TAIR AT1G72200 : RING/U-box superfamily protein
RAP-DB (Rice) LOC_Os11g05300.1 : RING-H2 finger protein, putative, expressed
MaizeGDB (Corn) Zm00025a020524
Brachypodium KQJ99700
Barley HORVU5Hr1G121280.8 , HORVU5Hr1G121280.7
Wheat TraesCS4A02G338900 , TraesCS5D02G535300 , TraesCS5B02G548200
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.003G112500 expressed protein -
2 Sobic.001G299200 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
3 Sobic.010G046801 - -
4 Sobic.001G477200 expressed protein K08505: protein transport protein SFT1
5 Sobic.004G353650 - -
6 Sobic.004G114200 zinc finger, C3HC4 type domain containing protein, expressed -
7 Sobic.001G450400 cyclin, putative, expressed -
8 Sobic.002G373900 lung seven transmembrane domain containing protein, putative, expressed -
9 Sobic.006G163501 - -
10 Sobic.004G049400 wound induced protein, putative, expressed -
11 Sobic.003G268800 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@STE_MEKK_ste11_MAP3K.5 - STE kinases include homologs to sterile 7, sterile 11 and sterile 20 from yeast, expressed -
12 Sobic.003G003300 expressed protein -
13 Sobic.003G212300 mitochondrial chaperone BCS1, putative, expressed -
14 Sobic.006G249900 MBTB9 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed K10523: speckle-type POZ protein
15 Sobic.002G125400 - -
16 Sobic.001G020350 - -
17 Sobic.007G194400 exo70 exocyst complex subunit domain containing protein, expressed -
18 Sobic.001G317700 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.004G221200 - -
20 Sobic.010G193100 expressed protein -


Gene co-expression network
sample Sobic004G163500 Sobic004G163500 Sobic003G112500 Sobic003G112500 Sobic004G163500--Sobic003G112500 Sobic001G299200 Sobic001G299200 Sobic004G163500--Sobic001G299200 Sobic010G046801 Sobic010G046801 Sobic004G163500--Sobic010G046801 Sobic001G477200 Sobic001G477200 Sobic004G163500--Sobic001G477200 Sobic004G353650 Sobic004G353650 Sobic004G163500--Sobic004G353650 Sobic004G114200 Sobic004G114200 Sobic004G163500--Sobic004G114200 Sobic001G450400 Sobic001G450400 Sobic004G163500--Sobic001G450400 Sobic002G373900 Sobic002G373900 Sobic004G163500--Sobic002G373900 Sobic006G163501 Sobic006G163501 Sobic004G163500--Sobic006G163501 Sobic003G112500--Sobic006G163501 Sobic006G061500 Sobic006G061500 Sobic003G112500--Sobic006G061500 Sobic004G230000 Sobic004G230000 Sobic003G112500--Sobic004G230000 Sobic006G083201 Sobic006G083201 Sobic001G299200--Sobic006G083201 Sobic001G299200--Sobic004G163500 Sobic001G299200--Sobic003G112500 Sobic004G058500 Sobic004G058500 Sobic001G299200--Sobic004G058500 Sobic003G323800 Sobic003G323800 Sobic001G299200--Sobic003G323800 Sobic002G168400 Sobic002G168400 Sobic001G299200--Sobic002G168400 Sobic002G235500 Sobic002G235500 Sobic001G299200--Sobic002G235500 Sobic003G212300 Sobic003G212300 Sobic001G299200--Sobic003G212300 Sobic001G397850 Sobic001G397850 Sobic001G299200--Sobic001G397850 Sobic004G024350 Sobic004G024350 Sobic010G046801--Sobic004G024350 Sobic002G310400 Sobic002G310400 Sobic010G046801--Sobic002G310400 Sobic004G187501 Sobic004G187501 Sobic010G046801--Sobic004G187501 Sobic002G125400 Sobic002G125400 Sobic010G046801--Sobic002G125400 Sobic010G046801--Sobic004G230000 Sobic001G021900 Sobic001G021900 Sobic001G477200--Sobic001G021900 Sobic001G477200--Sobic002G235500 Sobic005G179200 Sobic005G179200 Sobic001G477200--Sobic005G179200 Sobic001G477200--Sobic004G163500 Sobic009G035200 Sobic009G035200 Sobic001G477200--Sobic009G035200 Sobic002G253000 Sobic002G253000 Sobic001G477200--Sobic002G253000 Sobic004G189400 Sobic004G189400 Sobic001G477200--Sobic004G189400 Sobic006G162100 Sobic006G162100 Sobic001G477200--Sobic006G162100 Sobic005G051200 Sobic005G051200 Sobic001G477200--Sobic005G051200 Sobic010G193100 Sobic010G193100 Sobic004G353650--Sobic010G193100 Sobic005G199151 Sobic005G199151 Sobic004G353650--Sobic005G199151 Sobic006G249900 Sobic006G249900 Sobic004G353650--Sobic006G249900 Sobic001G171700 Sobic001G171700 Sobic004G353650--Sobic001G171700 Sobic004G157050 Sobic004G157050 Sobic004G353650--Sobic004G157050 Sobic003G160433 Sobic003G160433 Sobic004G353650--Sobic003G160433 Sobic002G380550 Sobic002G380550 Sobic004G353650--Sobic002G380550 Sobic010G267300 Sobic010G267300 Sobic004G353650--Sobic010G267300 Sobic001G465600 Sobic001G465600 Sobic004G353650--Sobic001G465600 Sobic004G114200--Sobic010G046801 Sobic004G114200--Sobic004G163500 Sobic004G114200--Sobic004G187501 Sobic004G114200--Sobic003G112500 Sobic004G114200--Sobic002G125400 Sobic004G221200 Sobic004G221200 Sobic004G114200--Sobic004G221200 Sobic001G331401 Sobic001G331401 Sobic004G114200--Sobic001G331401 Sobic003G003300 Sobic003G003300 Sobic004G114200--Sobic003G003300 Sobic002G028300 Sobic002G028300 Sobic004G114200--Sobic002G028300 Sobic001G450400--Sobic003G003300 Sobic005G097500 Sobic005G097500 Sobic001G450400--Sobic005G097500 Sobic006G202900 Sobic006G202900 Sobic001G450400--Sobic006G202900 Sobic008G029000 Sobic008G029000 Sobic001G450400--Sobic008G029000 Sobic001G450400--Sobic003G112500 Sobic002G385601 Sobic002G385601 Sobic001G450400--Sobic002G385601 Sobic005G187800 Sobic005G187800 Sobic001G450400--Sobic005G187800 Sobic001G450400--Sobic010G193100 Sobic001G319000 Sobic001G319000 Sobic001G450400--Sobic001G319000 Sobic006G233800 Sobic006G233800 Sobic002G373900--Sobic006G233800 Sobic004G191901 Sobic004G191901 Sobic002G373900--Sobic004G191901 Sobic009G074200 Sobic009G074200 Sobic002G373900--Sobic009G074200 Sobic003G249500 Sobic003G249500 Sobic002G373900--Sobic003G249500 Sobic002G373900--Sobic002G385601 Sobic003G352000 Sobic003G352000 Sobic002G373900--Sobic003G352000 Sobic001G450900 Sobic001G450900 Sobic002G373900--Sobic001G450900 SobicK029400 SobicK029400 Sobic002G373900--SobicK029400 Sobic006G057100 Sobic006G057100 Sobic002G373900--Sobic006G057100 Sobic006G163501--Sobic004G230000 Sobic003G344501 Sobic003G344501 Sobic006G163501--Sobic003G344501
Octagon: transcription factors


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