Gene annotation
Transcriptome id Sobic.001G477200.1,Sobic.001G477200.2
Synonym
Functional annotation expressed protein
UniProt A0A1B6QQ13
Pfam -
Panther DB PTHR12791 PTHR12791:SF31
NCBI CDD -
KEGG Orthology K08505; protein transport protein SFT1
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G14600 : Target SNARE coiled-coil domain protein
RAP-DB (Rice) LOC_Os03g08870.1 : expressed protein
MaizeGDB (Corn) -
Brachypodium KQK23218
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G021900 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
2 Sobic.002G235500 bZIP transcription factor domain containing protein, expressed -
3 Sobic.005G179200 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsWAK112d - OsWAK receptor-like protein kinase, expressed -
4 Sobic.004G163500 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@RING-H2 finger protein, putative, expressed -
5 Sobic.009G035200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thioesterase family protein, putative, expressed -
6 Sobic.002G253000 no apical meristem protein, putative, expressed -
7 Sobic.004G189400 expressed protein -
8 Sobic.006G162100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glyoxalase family protein, putative, expressed -
9 Sobic.005G051200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
10 Sobic.003G293700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@anthocyanidin 5,3-O-glucosyltransferase, putative, expressed -
11 Sobic.007G145600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@4-Coumarate-CoA ligase(PubMedID : 22313236)@AMP-binding domain containing protein, expressed K01904: 4-coumarate--CoA ligase
12 Sobic.003G236450 - -
13 Sobic.002G314700 receptor-like protein kinase, putative, expressed -
14 Sobic.010G066601 - -
15 Sobic.006G153100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
16 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.001G317700 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
18 Sobic.002G042100 gibberellin receptor GID1L2, putative, expressed -
19 Sobic.001G325000 expressed protein -
20 Sobic.001G097600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@"salidroside biosynthesis, ethanol degradation II, phytol degradation"(PubMedID : 21853065)@dehydrogenase, putative, expressed K18857: alcohol dehydrogenase class-P


Gene co-expression network
sample Sobic001G477200 Sobic001G477200 Sobic001G021900 Sobic001G021900 Sobic001G477200--Sobic001G021900 Sobic002G235500 Sobic002G235500 Sobic001G477200--Sobic002G235500 Sobic005G179200 Sobic005G179200 Sobic001G477200--Sobic005G179200 Sobic004G163500 Sobic004G163500 Sobic001G477200--Sobic004G163500 Sobic009G035200 Sobic009G035200 Sobic001G477200--Sobic009G035200 Sobic002G253000 Sobic002G253000 Sobic001G477200--Sobic002G253000 Sobic004G189400 Sobic004G189400 Sobic001G477200--Sobic004G189400 Sobic006G162100 Sobic006G162100 Sobic001G477200--Sobic006G162100 Sobic005G051200 Sobic005G051200 Sobic001G477200--Sobic005G051200 Sobic001G021900--Sobic002G235500 Sobic003G117600 Sobic003G117600 Sobic001G021900--Sobic003G117600 Sobic003G139300 Sobic003G139300 Sobic001G021900--Sobic003G139300 Sobic001G325400 Sobic001G325400 Sobic001G021900--Sobic001G325400 Sobic001G021900--Sobic009G035200 Sobic010G185000 Sobic010G185000 Sobic001G021900--Sobic010G185000 Sobic001G119000 Sobic001G119000 Sobic001G021900--Sobic001G119000 Sobic001G082600 Sobic001G082600 Sobic001G021900--Sobic001G082600 Sobic006G092500 Sobic006G092500 Sobic001G021900--Sobic006G092500 Sobic010G239300 Sobic010G239300 Sobic002G235500--Sobic010G239300 Sobic001G317200 Sobic001G317200 Sobic002G235500--Sobic001G317200 Sobic002G415100 Sobic002G415100 Sobic002G235500--Sobic002G415100 Sobic006G099900 Sobic006G099900 Sobic002G235500--Sobic006G099900 Sobic009G164600 Sobic009G164600 Sobic002G235500--Sobic009G164600 Sobic002G235500--Sobic001G021900 Sobic001G325000 Sobic001G325000 Sobic002G235500--Sobic001G325000 Sobic003G252800 Sobic003G252800 Sobic002G235500--Sobic003G252800 Sobic007G141500 Sobic007G141500 Sobic002G235500--Sobic007G141500 Sobic006G153100 Sobic006G153100 Sobic005G179200--Sobic006G153100 Sobic005G179200--Sobic003G117600 Sobic005G206601 Sobic005G206601 Sobic005G179200--Sobic005G206601 Sobic010G084700 Sobic010G084700 Sobic005G179200--Sobic010G084700 Sobic001G444400 Sobic001G444400 Sobic005G179200--Sobic001G444400 Sobic005G063100 Sobic005G063100 Sobic005G179200--Sobic005G063100 Sobic004G071650 Sobic004G071650 Sobic005G179200--Sobic004G071650 Sobic005G179200--Sobic005G051200 Sobic005G101700 Sobic005G101700 Sobic005G179200--Sobic005G101700 Sobic003G112500 Sobic003G112500 Sobic004G163500--Sobic003G112500 Sobic001G299200 Sobic001G299200 Sobic004G163500--Sobic001G299200 Sobic010G046801 Sobic010G046801 Sobic004G163500--Sobic010G046801 Sobic004G163500--Sobic001G477200 Sobic004G353650 Sobic004G353650 Sobic004G163500--Sobic004G353650 Sobic004G114200 Sobic004G114200 Sobic004G163500--Sobic004G114200 Sobic001G450400 Sobic001G450400 Sobic004G163500--Sobic001G450400 Sobic002G373900 Sobic002G373900 Sobic004G163500--Sobic002G373900 Sobic006G163501 Sobic006G163501 Sobic004G163500--Sobic006G163501 Sobic009G035200--Sobic005G051200 Sobic009G229000 Sobic009G229000 Sobic009G035200--Sobic009G229000 Sobic008G050600 Sobic008G050600 Sobic009G035200--Sobic008G050600 Sobic002G414600 Sobic002G414600 Sobic009G035200--Sobic002G414600 Sobic008G136400 Sobic008G136400 Sobic009G035200--Sobic008G136400 Sobic003G345100 Sobic003G345100 Sobic009G035200--Sobic003G345100 Sobic009G035200--Sobic005G063100 Sobic009G035200--Sobic006G092500 Sobic009G035200--Sobic001G317200 Sobic002G318501 Sobic002G318501 Sobic002G253000--Sobic002G318501 Sobic010G057100 Sobic010G057100 Sobic002G253000--Sobic010G057100 Sobic009G015000 Sobic009G015000 Sobic002G253000--Sobic009G015000 Sobic005G016600 Sobic005G016600 Sobic002G253000--Sobic005G016600 Sobic002G314700 Sobic002G314700 Sobic002G253000--Sobic002G314700 Sobic004G342900 Sobic004G342900 Sobic002G253000--Sobic004G342900 Sobic004G099500 Sobic004G099500 Sobic002G253000--Sobic004G099500 Sobic004G128000 Sobic004G128000 Sobic002G253000--Sobic004G128000 Sobic001G062600 Sobic001G062600 Sobic002G253000--Sobic001G062600 Sobic002G140400 Sobic002G140400 Sobic004G189400--Sobic002G140400 Sobic005G091500 Sobic005G091500 Sobic004G189400--Sobic005G091500 Sobic002G263400 Sobic002G263400 Sobic004G189400--Sobic002G263400 Sobic004G189400--Sobic008G050600 Sobic004G237800 Sobic004G237800 Sobic004G189400--Sobic004G237800 Sobic003G382600 Sobic003G382600 Sobic004G189400--Sobic003G382600 Sobic004G189400--Sobic006G099900 Sobic004G189400--Sobic008G136400 Sobic005G029200 Sobic005G029200 Sobic004G189400--Sobic005G029200 Sobic004G148100 Sobic004G148100 Sobic006G162100--Sobic004G148100 Sobic007G215600 Sobic007G215600 Sobic006G162100--Sobic007G215600 Sobic002G040900 Sobic002G040900 Sobic006G162100--Sobic002G040900 Sobic004G189500 Sobic004G189500 Sobic006G162100--Sobic004G189500 Sobic006G039100 Sobic006G039100 Sobic006G162100--Sobic006G039100 Sobic002G055700 Sobic002G055700 Sobic006G162100--Sobic002G055700 Sobic005G177600 Sobic005G177600 Sobic006G162100--Sobic005G177600 Sobic006G113500 Sobic006G113500 Sobic006G162100--Sobic006G113500 Sobic006G162100--Sobic001G325400 Sobic005G051200--Sobic001G317200 Sobic005G051200--Sobic009G035200 Sobic005G051200--Sobic008G050600 Sobic002G416600 Sobic002G416600 Sobic005G051200--Sobic002G416600 Sobic005G051200--Sobic009G164600 Sobic005G051200--Sobic003G345100 Sobic003G286600 Sobic003G286600 Sobic005G051200--Sobic003G286600 Sobic005G051200--Sobic005G063100 Sobic001G252300 Sobic001G252300 Sobic005G051200--Sobic001G252300
Octagon: transcription factors


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