Gene annotation
Transcriptome id Sobic.001G021900.1,Sobic.001G021900.2
Synonym ILR1, Sb01g002080
Functional annotation hydrolase, putative, expressed
UniProt C6JS25 , C5WTX5 , A0A1Z5S427
Pfam PF07687 PF01546
Panther DB PTHR11014 PTHR11014:SF99
NCBI CDD -
KEGG Orthology K14664; IAA-amino acid hydrolase
Gene Ontology GO:0016787; hydrolase activity GO:0008152metabolic process


Orthologs (automatic annotation)
TAIR AT3G02875 : Peptidase M20/M25/M40 family protein
RAP-DB (Rice) LOC_Os03g62060.1 : hydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a018233 , Zm00025a019501 , Zm00025a016369 , Zm00025a045525
Brachypodium PNT75500 , KQK08346 , KQK17297
Barley HORVU2Hr1G012850.14 , HORVU2Hr1G012850.15 , HORVU2Hr1G012850.11 , HORVU2Hr1G012850.5 , HORVU2Hr1G012850.7 , HORVU2Hr1G012850.1 , HORVU2Hr1G012850.2 , HORVU2Hr1G012850.8 , HORVU2Hr1G012850.9 , HORVU5Hr1G118040.1 , HORVU5Hr1G118040.3 , HORVU5Hr1G118040.2
Wheat TraesCS4A02G355300 , TraesCS7D02G426400 , TraesCS5B02G517200 , TraesCS2D02G074400 , TraesCS2B02G091000 , TraesCS4A02G355400 , TraesCS7A02G435700 , TraesCS7B02G335500 , TraesCS7B02G335500 , TraesCS2D02G074700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G235500 bZIP transcription factor domain containing protein, expressed -
2 Sobic.003G117600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@flowering promoting factor-like 1, putative, expressed -
3 Sobic.003G139300 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in flower and root, expression induced by IAA treatment"(PubMedID : 20528920)@MDR-like ABC transporter, putative, expressed K05658: ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
4 Sobic.001G325400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
5 Sobic.009G035200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thioesterase family protein, putative, expressed -
6 Sobic.010G185000 VQ domain containing protein, putative, expressed -
7 Sobic.001G119000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
8 Sobic.001G082600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bHelix-loop-helix transcription factor, putative, expressed -
9 Sobic.006G092500 expressed protein -
10 Sobic.002G375400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
11 Sobic.004G046200 sulfotransferase domain containing protein, expressed -
12 Sobic.007G141500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
13 Sobic.005G093000 - -
14 Sobic.001G476500 helix-loop-helix DNA-binding protein, putative, expressed -
15 Sobic.005G206601 - -
16 Sobic.001G389000 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@WRKY55, expressed -
17 Sobic.006G277600 peroxidase precursor, putative, expressed K00430: peroxidase
18 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
19 Sobic.009G183400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glycosyl hydrolases family 17, putative, expressed -
20 Sobic.009G229000 expressed protein -


Gene co-expression network
sample Sobic001G021900 Sobic001G021900 Sobic002G235500 Sobic002G235500 Sobic001G021900--Sobic002G235500 Sobic003G117600 Sobic003G117600 Sobic001G021900--Sobic003G117600 Sobic003G139300 Sobic003G139300 Sobic001G021900--Sobic003G139300 Sobic001G325400 Sobic001G325400 Sobic001G021900--Sobic001G325400 Sobic009G035200 Sobic009G035200 Sobic001G021900--Sobic009G035200 Sobic010G185000 Sobic010G185000 Sobic001G021900--Sobic010G185000 Sobic001G119000 Sobic001G119000 Sobic001G021900--Sobic001G119000 Sobic001G082600 Sobic001G082600 Sobic001G021900--Sobic001G082600 Sobic006G092500 Sobic006G092500 Sobic001G021900--Sobic006G092500 Sobic010G239300 Sobic010G239300 Sobic002G235500--Sobic010G239300 Sobic001G317200 Sobic001G317200 Sobic002G235500--Sobic001G317200 Sobic002G415100 Sobic002G415100 Sobic002G235500--Sobic002G415100 Sobic006G099900 Sobic006G099900 Sobic002G235500--Sobic006G099900 Sobic009G164600 Sobic009G164600 Sobic002G235500--Sobic009G164600 Sobic002G235500--Sobic001G021900 Sobic001G325000 Sobic001G325000 Sobic002G235500--Sobic001G325000 Sobic003G252800 Sobic003G252800 Sobic002G235500--Sobic003G252800 Sobic007G141500 Sobic007G141500 Sobic002G235500--Sobic007G141500 Sobic006G277600 Sobic006G277600 Sobic003G117600--Sobic006G277600 Sobic003G117600--Sobic007G141500 Sobic005G063100 Sobic005G063100 Sobic003G117600--Sobic005G063100 Sobic003G117600--Sobic006G092500 Sobic005G206601 Sobic005G206601 Sobic003G117600--Sobic005G206601 Sobic006G153100 Sobic006G153100 Sobic003G117600--Sobic006G153100 Sobic003G117600--Sobic001G325400 Sobic002G354100 Sobic002G354100 Sobic003G117600--Sobic002G354100 Sobic005G091500 Sobic005G091500 Sobic003G117600--Sobic005G091500 Sobic003G139300--Sobic001G021900 Sobic003G139300--Sobic002G235500 Sobic007G215900 Sobic007G215900 Sobic003G139300--Sobic007G215900 Sobic003G139300--Sobic001G082600 Sobic007G058300 Sobic007G058300 Sobic003G139300--Sobic007G058300 Sobic002G375400 Sobic002G375400 Sobic003G139300--Sobic002G375400 Sobic007G108700 Sobic007G108700 Sobic003G139300--Sobic007G108700 Sobic002G128300 Sobic002G128300 Sobic003G139300--Sobic002G128300 Sobic010G272300 Sobic010G272300 Sobic003G139300--Sobic010G272300 Sobic006G039100 Sobic006G039100 Sobic001G325400--Sobic006G039100 Sobic009G111000 Sobic009G111000 Sobic001G325400--Sobic009G111000 Sobic002G125700 Sobic002G125700 Sobic001G325400--Sobic002G125700 Sobic001G462700 Sobic001G462700 Sobic001G325400--Sobic001G462700 Sobic009G077800 Sobic009G077800 Sobic001G325400--Sobic009G077800 Sobic002G017800 Sobic002G017800 Sobic001G325400--Sobic002G017800 Sobic009G231000 Sobic009G231000 Sobic001G325400--Sobic009G231000 Sobic007G087200 Sobic007G087200 Sobic001G325400--Sobic007G087200 Sobic001G325400--Sobic003G117600 Sobic005G051200 Sobic005G051200 Sobic009G035200--Sobic005G051200 Sobic009G229000 Sobic009G229000 Sobic009G035200--Sobic009G229000 Sobic008G050600 Sobic008G050600 Sobic009G035200--Sobic008G050600 Sobic002G414600 Sobic002G414600 Sobic009G035200--Sobic002G414600 Sobic008G136400 Sobic008G136400 Sobic009G035200--Sobic008G136400 Sobic003G345100 Sobic003G345100 Sobic009G035200--Sobic003G345100 Sobic009G035200--Sobic005G063100 Sobic009G035200--Sobic006G092500 Sobic009G035200--Sobic001G317200 Sobic002G247600 Sobic002G247600 Sobic010G185000--Sobic002G247600 Sobic005G018700 Sobic005G018700 Sobic010G185000--Sobic005G018700 Sobic007G227300 Sobic007G227300 Sobic010G185000--Sobic007G227300 Sobic009G240600 Sobic009G240600 Sobic010G185000--Sobic009G240600 Sobic004G348400 Sobic004G348400 Sobic010G185000--Sobic004G348400 Sobic010G185000--Sobic002G375400 Sobic001G481400 Sobic001G481400 Sobic010G185000--Sobic001G481400 Sobic010G185000--Sobic005G206601 Sobic007G151300 Sobic007G151300 Sobic010G185000--Sobic007G151300 Sobic001G119100 Sobic001G119100 Sobic001G119000--Sobic001G119100 Sobic001G119000--Sobic005G091500 Sobic002G183200 Sobic002G183200 Sobic001G119000--Sobic002G183200 Sobic002G245100 Sobic002G245100 Sobic001G119000--Sobic002G245100 Sobic001G252300 Sobic001G252300 Sobic001G119000--Sobic001G252300 Sobic002G055600 Sobic002G055600 Sobic001G119000--Sobic002G055600 Sobic004G189400 Sobic004G189400 Sobic001G119000--Sobic004G189400 Sobic004G166700 Sobic004G166700 Sobic001G119000--Sobic004G166700 Sobic001G389000 Sobic001G389000 Sobic001G119000--Sobic001G389000 Sobic003G079400 Sobic003G079400 Sobic001G082600--Sobic003G079400 Sobic004G046200 Sobic004G046200 Sobic001G082600--Sobic004G046200 Sobic006G044100 Sobic006G044100 Sobic001G082600--Sobic006G044100 Sobic003G011600 Sobic003G011600 Sobic001G082600--Sobic003G011600 Sobic003G255200 Sobic003G255200 Sobic001G082600--Sobic003G255200 Sobic001G082600--Sobic007G215900 Sobic008G106700 Sobic008G106700 Sobic001G082600--Sobic008G106700 Sobic004G176600 Sobic004G176600 Sobic001G082600--Sobic004G176600 Sobic009G179900 Sobic009G179900 Sobic001G082600--Sobic009G179900 Sobic001G476500 Sobic001G476500 Sobic006G092500--Sobic001G476500 Sobic009G183400 Sobic009G183400 Sobic006G092500--Sobic009G183400 Sobic004G100700 Sobic004G100700 Sobic006G092500--Sobic004G100700 Sobic004G205100 Sobic004G205100 Sobic006G092500--Sobic004G205100 Sobic006G092500--Sobic009G229000 Sobic006G092500--Sobic005G063100 Sobic003G352300 Sobic003G352300 Sobic006G092500--Sobic003G352300 Sobic006G092500--Sobic003G117600 Sobic010G259600 Sobic010G259600 Sobic006G092500--Sobic010G259600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.