Gene annotation
Transcriptome id Sobic.003G139300.3,Sobic.003G139300.2
Synonym P-glycoprotein, Sb03g011860, PGP21, SbPGP3
Functional annotation "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in flower and root, expression induced by IAA treatment" (PubMedID : 20528920)
MDR-like ABC transporter, putative, expressed
UniProt C5XI10
Pfam PF00005 PF00664
Panther DB PTHR24221 PTHR24221:SF257
NCBI CDD -
KEGG Orthology K05658; ABCB1, ATP-binding cassette, subfamily B (MDR/TAP), member 1
Gene Ontology GO:0016887; ATPase activity GO:0005524ATP binding GO:0016021integral component of membrane GO:0006810transport


Orthologs (automatic annotation)
TAIR AT3G62150 : P-glycoprotein 21
RAP-DB (Rice) LOC_Os01g18670.1 : MDR-like ABC transporter, putative, expressed
MaizeGDB (Corn) Zm00025a035146 , Zm00025a024230
Brachypodium PNT70382 , KQK07666 , KQK04014 , KQK04013
Barley HORVU1Hr1G017460.1 , HORVU1Hr1G017460.3 , HORVU1Hr1G017460.2
Wheat TraesCS1A02G081300 , TraesCS1D02G082900 , TraesCS1D02G082900 , TraesCS1B02G099000 , TraesCS2B02G012100 , TraesCS2B02G012100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G021900 hydrolase, putative, expressed K14664: IAA-amino acid hydrolase
2 Sobic.002G235500 bZIP transcription factor domain containing protein, expressed -
3 Sobic.007G215900 OsWAK73 - OsWAK receptor-like protein kinase, expressed -
4 Sobic.001G082600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bHelix-loop-helix transcription factor, putative, expressed -
5 Sobic.007G058300 AP2 domain containing protein, expressed -
6 Sobic.002G375400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
7 Sobic.007G108700 expressed protein -
8 Sobic.002G128300 MLA6 protein, putative, expressed K13457: RPM1, disease resistance protein RPM1
9 Sobic.010G272300 cysteine-rich receptor-like protein kinase 28 precursor, putative, expressed -
10 Sobic.003G011600 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed K00606: 3-methyl-2-oxobutanoate hydroxymethyltransferase
11 Sobic.004G348400 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
12 Sobic.004G176600 no apical meristem protein, putative, expressed -
13 Sobic.001G243600 glycine-rich cell wall structural protein 2 precursor, putative, expressed -
14 Sobic.006G125100 ubiquitin family protein, putative, expressed -
15 Sobic.002G310600 chalcone synthase, putative, expressed K17212: bisdemethoxycurcumin synthase
16 Sobic.001G147900 cytochrome P450, putative, expressed -
17 Sobic.001G462700 expressed protein -
18 Sobic.009G120000 - -
19 Sobic.002G125700 similar to Aquaporin PIP2-6(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09872: aquaporin PIP
20 Sobic.007G141500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase


Gene co-expression network
sample Sobic003G139300 Sobic003G139300 Sobic001G021900 Sobic001G021900 Sobic003G139300--Sobic001G021900 Sobic002G235500 Sobic002G235500 Sobic003G139300--Sobic002G235500 Sobic007G215900 Sobic007G215900 Sobic003G139300--Sobic007G215900 Sobic001G082600 Sobic001G082600 Sobic003G139300--Sobic001G082600 Sobic007G058300 Sobic007G058300 Sobic003G139300--Sobic007G058300 Sobic002G375400 Sobic002G375400 Sobic003G139300--Sobic002G375400 Sobic007G108700 Sobic007G108700 Sobic003G139300--Sobic007G108700 Sobic002G128300 Sobic002G128300 Sobic003G139300--Sobic002G128300 Sobic010G272300 Sobic010G272300 Sobic003G139300--Sobic010G272300 Sobic001G021900--Sobic002G235500 Sobic003G117600 Sobic003G117600 Sobic001G021900--Sobic003G117600 Sobic001G021900--Sobic003G139300 Sobic001G325400 Sobic001G325400 Sobic001G021900--Sobic001G325400 Sobic009G035200 Sobic009G035200 Sobic001G021900--Sobic009G035200 Sobic010G185000 Sobic010G185000 Sobic001G021900--Sobic010G185000 Sobic001G119000 Sobic001G119000 Sobic001G021900--Sobic001G119000 Sobic001G021900--Sobic001G082600 Sobic006G092500 Sobic006G092500 Sobic001G021900--Sobic006G092500 Sobic010G239300 Sobic010G239300 Sobic002G235500--Sobic010G239300 Sobic001G317200 Sobic001G317200 Sobic002G235500--Sobic001G317200 Sobic002G415100 Sobic002G415100 Sobic002G235500--Sobic002G415100 Sobic006G099900 Sobic006G099900 Sobic002G235500--Sobic006G099900 Sobic009G164600 Sobic009G164600 Sobic002G235500--Sobic009G164600 Sobic002G235500--Sobic001G021900 Sobic001G325000 Sobic001G325000 Sobic002G235500--Sobic001G325000 Sobic003G252800 Sobic003G252800 Sobic002G235500--Sobic003G252800 Sobic007G141500 Sobic007G141500 Sobic002G235500--Sobic007G141500 Sobic002G125700 Sobic002G125700 Sobic007G215900--Sobic002G125700 Sobic003G352300 Sobic003G352300 Sobic007G215900--Sobic003G352300 Sobic007G215900--Sobic001G082600 Sobic002G287100 Sobic002G287100 Sobic007G215900--Sobic002G287100 Sobic007G215900--Sobic006G092500 Sobic007G215900--Sobic002G375400 Sobic001G147900 Sobic001G147900 Sobic007G215900--Sobic001G147900 Sobic010G259600 Sobic010G259600 Sobic007G215900--Sobic010G259600 Sobic004G348400 Sobic004G348400 Sobic007G215900--Sobic004G348400 Sobic003G079400 Sobic003G079400 Sobic001G082600--Sobic003G079400 Sobic004G046200 Sobic004G046200 Sobic001G082600--Sobic004G046200 Sobic006G044100 Sobic006G044100 Sobic001G082600--Sobic006G044100 Sobic003G011600 Sobic003G011600 Sobic001G082600--Sobic003G011600 Sobic003G255200 Sobic003G255200 Sobic001G082600--Sobic003G255200 Sobic001G082600--Sobic007G215900 Sobic008G106700 Sobic008G106700 Sobic001G082600--Sobic008G106700 Sobic004G176600 Sobic004G176600 Sobic001G082600--Sobic004G176600 Sobic009G179900 Sobic009G179900 Sobic001G082600--Sobic009G179900 Sobic006G277550 Sobic006G277550 Sobic007G058300--Sobic006G277550 Sobic009G072900 Sobic009G072900 Sobic007G058300--Sobic009G072900 Sobic005G206601 Sobic005G206601 Sobic007G058300--Sobic005G206601 Sobic007G058300--Sobic002G375400 Sobic005G213200 Sobic005G213200 Sobic007G058300--Sobic005G213200 Sobic001G403000 Sobic001G403000 Sobic007G058300--Sobic001G403000 Sobic002G247600 Sobic002G247600 Sobic007G058300--Sobic002G247600 Sobic009G120000 Sobic009G120000 Sobic007G058300--Sobic009G120000 Sobic002G310600 Sobic002G310600 Sobic007G058300--Sobic002G310600 Sobic002G375400--Sobic004G176600 Sobic004G107700 Sobic004G107700 Sobic002G375400--Sobic004G107700 Sobic002G375400--Sobic010G185000 Sobic002G375400--Sobic005G206601 Sobic003G437200 Sobic003G437200 Sobic002G375400--Sobic003G437200 Sobic002G375400--Sobic009G072900 Sobic003G417800 Sobic003G417800 Sobic002G375400--Sobic003G417800 Sobic002G375400--Sobic001G403000 Sobic002G375400--Sobic004G348400 Sobic004G011100 Sobic004G011100 Sobic007G108700--Sobic004G011100 Sobic007G108700--Sobic003G139300 Sobic003G368600 Sobic003G368600 Sobic007G108700--Sobic003G368600 Sobic007G108700--Sobic001G021900 Sobic002G356500 Sobic002G356500 Sobic007G108700--Sobic002G356500 Sobic001G075300 Sobic001G075300 Sobic007G108700--Sobic001G075300 Sobic007G108700--Sobic002G235500 Sobic010G204200 Sobic010G204200 Sobic007G108700--Sobic010G204200 Sobic003G024900 Sobic003G024900 Sobic007G108700--Sobic003G024900 Sobic006G153100 Sobic006G153100 Sobic002G128300--Sobic006G153100 Sobic005G179200 Sobic005G179200 Sobic002G128300--Sobic005G179200 Sobic001G444400 Sobic001G444400 Sobic002G128300--Sobic001G444400 Sobic001G243600 Sobic001G243600 Sobic002G128300--Sobic001G243600 Sobic002G128300--Sobic009G120000 Sobic004G111800 Sobic004G111800 Sobic002G128300--Sobic004G111800 Sobic003G236450 Sobic003G236450 Sobic002G128300--Sobic003G236450 Sobic001G063000 Sobic001G063000 Sobic002G128300--Sobic001G063000 Sobic002G128300--Sobic007G141500 Sobic010G110800 Sobic010G110800 Sobic010G272300--Sobic010G110800 Sobic006G059700 Sobic006G059700 Sobic010G272300--Sobic006G059700 Sobic010G272300--Sobic001G147900 Sobic005G043000 Sobic005G043000 Sobic010G272300--Sobic005G043000 Sobic003G280400 Sobic003G280400 Sobic010G272300--Sobic003G280400 Sobic006G256900 Sobic006G256900 Sobic010G272300--Sobic006G256900 Sobic010G272300--Sobic001G082600 Sobic010G272300--Sobic003G011600 Sobic003G404600 Sobic003G404600 Sobic010G272300--Sobic003G404600
Octagon: transcription factors


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