Gene annotation
Transcriptome id Sobic.003G011600.1
Synonym KPHMT1, Sb03g001180, PANB1
Functional annotation 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed
UniProt C5XKA7
Pfam PF02548
Panther DB PTHR20881 PTHR20881:SF0
NCBI CDD KOG2949; Ketopantoate hydroxymethyltransferase
KEGG Orthology K00606; 3-methyl-2-oxobutanoate hydroxymethyltransferase
Gene Ontology GO:0015940; pantothenate biosynthetic process GO:00038643-methyl-2-oxobutanoate hydroxymethyltransferase activity


Orthologs (automatic annotation)
TAIR AT2G46110 : ketopantoate hydroxymethyltransferase 1
RAP-DB (Rice) LOC_Os01g12560.1 : 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed
MaizeGDB (Corn) -
Brachypodium -
Barley -
Wheat -
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.004G348400 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
2 Sobic.003G368600 terpene synthase, putative, expressed -
3 Sobic.006G044100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
4 Sobic.001G082600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bHelix-loop-helix transcription factor, putative, expressed -
5 Sobic.004G176600 no apical meristem protein, putative, expressed -
6 Sobic.004G046200 sulfotransferase domain containing protein, expressed -
7 Sobic.003G079400 Ser/Thr protein kinase, putative, expressed -
8 Sobic.006G197100 DNA binding protein, putative, expressed -
9 Sobic.003G255500 expressed protein -
10 Sobic.001G462700 expressed protein -
11 Sobic.006G243600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
12 Sobic.002G247600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os9bglu30 - beta-glucosidase, similar to Os4bglu12 exoglucanase, expressed K01188: beta-glucosidase
13 Sobic.001G147900 cytochrome P450, putative, expressed -
14 Sobic.007G215900 OsWAK73 - OsWAK receptor-like protein kinase, expressed -
15 Sobic.003G366600 anthocyanidin 3-O-glucosyltransferase, putative, expressed -
16 Sobic.003G255200 expressed protein -
17 Sobic.006G059700 hydrolase, NUDIX family, domain containing protein, expressed K07766: diphosphoinositol-polyphosphate diphosphatase
18 Sobic.009G179900 OsCML9 - Calmodulin-related calcium sensor protein, expressed K02183: calmodulin
19 Sobic.009G187200 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
20 Sobic.004G202400 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@high affinity nitrate transporter, putative, expressed -


Gene co-expression network
sample Sobic003G011600 Sobic003G011600 Sobic004G348400 Sobic004G348400 Sobic003G011600--Sobic004G348400 Sobic003G368600 Sobic003G368600 Sobic003G011600--Sobic003G368600 Sobic006G044100 Sobic006G044100 Sobic003G011600--Sobic006G044100 Sobic001G082600 Sobic001G082600 Sobic003G011600--Sobic001G082600 Sobic004G176600 Sobic004G176600 Sobic003G011600--Sobic004G176600 Sobic004G046200 Sobic004G046200 Sobic003G011600--Sobic004G046200 Sobic003G079400 Sobic003G079400 Sobic003G011600--Sobic003G079400 Sobic006G197100 Sobic006G197100 Sobic003G011600--Sobic006G197100 Sobic003G255500 Sobic003G255500 Sobic003G011600--Sobic003G255500 Sobic004G348400--Sobic003G011600 Sobic003G366600 Sobic003G366600 Sobic004G348400--Sobic003G366600 Sobic004G348400--Sobic003G368600 Sobic002G247600 Sobic002G247600 Sobic004G348400--Sobic002G247600 Sobic010G185000 Sobic010G185000 Sobic004G348400--Sobic010G185000 Sobic002G375400 Sobic002G375400 Sobic004G348400--Sobic002G375400 Sobic004G348400--Sobic004G176600 Sobic004G348400--Sobic006G044100 Sobic006G243600 Sobic006G243600 Sobic004G348400--Sobic006G243600 Sobic003G368600--Sobic006G197100 Sobic005G107800 Sobic005G107800 Sobic003G368600--Sobic005G107800 Sobic003G368600--Sobic004G348400 Sobic001G147900 Sobic001G147900 Sobic003G368600--Sobic001G147900 Sobic002G042200 Sobic002G042200 Sobic003G368600--Sobic002G042200 Sobic003G368600--Sobic003G011600 Sobic003G368600--Sobic006G243600 Sobic002G003800 Sobic002G003800 Sobic003G368600--Sobic002G003800 Sobic007G030501 Sobic007G030501 Sobic003G368600--Sobic007G030501 Sobic006G044100--Sobic004G046200 Sobic006G044100--Sobic004G176600 Sobic009G187200 Sobic009G187200 Sobic006G044100--Sobic009G187200 Sobic001G481400 Sobic001G481400 Sobic006G044100--Sobic001G481400 Sobic008G106700 Sobic008G106700 Sobic006G044100--Sobic008G106700 Sobic006G044100--Sobic003G366600 Sobic008G172600 Sobic008G172600 Sobic006G044100--Sobic008G172600 Sobic006G277600 Sobic006G277600 Sobic006G044100--Sobic006G277600 Sobic003G255200 Sobic003G255200 Sobic006G044100--Sobic003G255200 Sobic001G082600--Sobic003G079400 Sobic001G082600--Sobic004G046200 Sobic001G082600--Sobic006G044100 Sobic001G082600--Sobic003G011600 Sobic001G082600--Sobic003G255200 Sobic007G215900 Sobic007G215900 Sobic001G082600--Sobic007G215900 Sobic001G082600--Sobic008G106700 Sobic001G082600--Sobic004G176600 Sobic009G179900 Sobic009G179900 Sobic001G082600--Sobic009G179900 Sobic004G176600--Sobic006G044100 Sobic004G176600--Sobic002G375400 Sobic004G107700 Sobic004G107700 Sobic004G176600--Sobic004G107700 Sobic005G084600 Sobic005G084600 Sobic004G176600--Sobic005G084600 Sobic004G176600--Sobic003G255200 Sobic003G437200 Sobic003G437200 Sobic004G176600--Sobic003G437200 Sobic003G417800 Sobic003G417800 Sobic004G176600--Sobic003G417800 Sobic004G176600--Sobic010G185000 Sobic004G176600--Sobic004G348400 Sobic004G046200--Sobic008G106700 Sobic004G046200--Sobic006G044100 Sobic004G046200--Sobic009G187200 Sobic006G199800 Sobic006G199800 Sobic004G046200--Sobic006G199800 Sobic003G084400 Sobic003G084400 Sobic004G046200--Sobic003G084400 Sobic004G046200--Sobic003G255200 Sobic001G500000 Sobic001G500000 Sobic004G046200--Sobic001G500000 Sobic004G046200--Sobic003G079400 Sobic009G111000 Sobic009G111000 Sobic004G046200--Sobic009G111000 Sobic003G079400--Sobic004G046200 Sobic003G079400--Sobic001G082600 Sobic003G079400--Sobic006G197100 Sobic003G079400--Sobic002G003800 Sobic004G042000 Sobic004G042000 Sobic003G079400--Sobic004G042000 Sobic003G079400--Sobic008G106700 Sobic003G016100 Sobic003G016100 Sobic003G079400--Sobic003G016100 Sobic004G349125 Sobic004G349125 Sobic003G079400--Sobic004G349125 Sobic003G079400--Sobic009G187200 Sobic006G197100--Sobic002G003800 Sobic006G197100--Sobic004G042000 Sobic006G197100--Sobic004G349125 Sobic001G416200 Sobic001G416200 Sobic006G197100--Sobic001G416200 Sobic004G202400 Sobic004G202400 Sobic006G197100--Sobic004G202400 Sobic001G264000 Sobic001G264000 Sobic006G197100--Sobic001G264000 Sobic003G311800 Sobic003G311800 Sobic006G197100--Sobic003G311800 Sobic006G197100--Sobic002G042200 Sobic006G197100--Sobic003G368600 Sobic001G503100 Sobic001G503100 Sobic003G255500--Sobic001G503100 Sobic003G255500--Sobic003G255200 Sobic003G255500--Sobic006G199800 Sobic001G449600 Sobic001G449600 Sobic003G255500--Sobic001G449600 Sobic003G255500--Sobic006G044100 Sobic003G255500--Sobic009G187200 Sobic003G255500--Sobic004G107700 Sobic003G255500--Sobic004G348400 Sobic001G161500 Sobic001G161500 Sobic003G255500--Sobic001G161500
Octagon: transcription factors


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