Gene annotation
Transcriptome id Sobic.001G462700.2,Sobic.001G462700.1
Synonym Sb01g043420
Functional annotation expressed protein
UniProt C5WTQ6 , A0A1Z5SAT2
Pfam PF13414
Panther DB PTHR22904 PTHR22904:SF348
NCBI CDD KOG4555; TPR repeat-containing protein
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT5G43120 : ARM-repeat/Tetratricopeptide repeat (TPR)-like protein
RAP-DB (Rice) LOC_Os03g10980.1 : expressed protein
MaizeGDB (Corn) Zm00025a001109
Brachypodium KQK23006
Barley HORVU4Hr1G069340.1 , HORVU4Hr1G069340.2 , HORVU4Hr1G069340.3
Wheat TraesCS4B02G254500 , TraesCS4D02G254300 , TraesCS4D02G254300 , TraesCS4A02G050100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G247600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os9bglu30 - beta-glucosidase, similar to Os4bglu12 exoglucanase, expressed K01188: beta-glucosidase
2 Sobic.001G325400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
3 Sobic.006G039100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL36 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
4 Sobic.009G111000 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@pectinesterase, putative, expressed K01051: pectinesterase
5 Sobic.007G204700 expressed protein -
6 Sobic.003G117600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@flowering promoting factor-like 1, putative, expressed -
7 Sobic.010G008400 bark storage protein A precursor, putative, expressed -
8 Sobic.001G331200 "domain confirmed by Pfam database, expression supported by NCBI EST database, expression induced by IAA and BR treatments"(PubMedID : 20499123)@OsGH3.8 - Probable indole-3-acetic acid-amido synthetase, expressed K14487: auxin responsive GH3 gene family
9 Sobic.004G046200 sulfotransferase domain containing protein, expressed -
10 Sobic.002G176100 membrane protein, putative, expressed -
11 Sobic.002G017800 expressed protein -
12 Sobic.003G319500 receptor protein kinase, putative, expressed -
13 Sobic.006G125100 ubiquitin family protein, putative, expressed -
14 Sobic.007G151300 Cupin domain containing protein, expressed -
15 Sobic.003G011600 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed K00606: 3-methyl-2-oxobutanoate hydroxymethyltransferase
16 Sobic.007G141500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
17 Sobic.002G125700 similar to Aquaporin PIP2-6(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09872: aquaporin PIP
18 Sobic.010G270500 GDSL-like lipase/acylhydrolase, putative, expressed -
19 Sobic.006G243600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed K00430: peroxidase
20 Sobic.004G348400 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -


Gene co-expression network
sample Sobic001G462700 Sobic001G462700 Sobic002G247600 Sobic002G247600 Sobic001G462700--Sobic002G247600 Sobic001G325400 Sobic001G325400 Sobic001G462700--Sobic001G325400 Sobic006G039100 Sobic006G039100 Sobic001G462700--Sobic006G039100 Sobic009G111000 Sobic009G111000 Sobic001G462700--Sobic009G111000 Sobic007G204700 Sobic007G204700 Sobic001G462700--Sobic007G204700 Sobic003G117600 Sobic003G117600 Sobic001G462700--Sobic003G117600 Sobic010G008400 Sobic010G008400 Sobic001G462700--Sobic010G008400 Sobic001G331200 Sobic001G331200 Sobic001G462700--Sobic001G331200 Sobic004G046200 Sobic004G046200 Sobic001G462700--Sobic004G046200 Sobic002G247600--Sobic001G462700 Sobic010G185000 Sobic010G185000 Sobic002G247600--Sobic010G185000 Sobic009G003600 Sobic009G003600 Sobic002G247600--Sobic009G003600 Sobic004G348400 Sobic004G348400 Sobic002G247600--Sobic004G348400 Sobic002G247600--Sobic001G331200 Sobic001G333400 Sobic001G333400 Sobic002G247600--Sobic001G333400 Sobic007G151300 Sobic007G151300 Sobic002G247600--Sobic007G151300 Sobic005G206601 Sobic005G206601 Sobic002G247600--Sobic005G206601 Sobic002G247600--Sobic003G117600 Sobic001G325400--Sobic006G039100 Sobic001G325400--Sobic009G111000 Sobic002G125700 Sobic002G125700 Sobic001G325400--Sobic002G125700 Sobic001G325400--Sobic001G462700 Sobic009G077800 Sobic009G077800 Sobic001G325400--Sobic009G077800 Sobic002G017800 Sobic002G017800 Sobic001G325400--Sobic002G017800 Sobic009G231000 Sobic009G231000 Sobic001G325400--Sobic009G231000 Sobic007G087200 Sobic007G087200 Sobic001G325400--Sobic007G087200 Sobic001G325400--Sobic003G117600 Sobic006G039100--Sobic001G325400 Sobic006G039100--Sobic009G231000 Sobic006G039100--Sobic001G462700 Sobic004G189500 Sobic004G189500 Sobic006G039100--Sobic004G189500 Sobic003G087300 Sobic003G087300 Sobic006G039100--Sobic003G087300 Sobic002G416600 Sobic002G416600 Sobic006G039100--Sobic002G416600 Sobic002G366600 Sobic002G366600 Sobic006G039100--Sobic002G366600 Sobic004G148100 Sobic004G148100 Sobic006G039100--Sobic004G148100 Sobic006G039100--Sobic009G077800 Sobic009G111000--Sobic002G017800 Sobic002G176100 Sobic002G176100 Sobic009G111000--Sobic002G176100 Sobic001G367600 Sobic001G367600 Sobic009G111000--Sobic001G367600 Sobic003G417200 Sobic003G417200 Sobic009G111000--Sobic003G417200 Sobic009G111000--Sobic001G325400 Sobic003G426400 Sobic003G426400 Sobic009G111000--Sobic003G426400 Sobic002G055700 Sobic002G055700 Sobic009G111000--Sobic002G055700 Sobic001G500000 Sobic001G500000 Sobic009G111000--Sobic001G500000 Sobic003G319500 Sobic003G319500 Sobic009G111000--Sobic003G319500 Sobic006G158400 Sobic006G158400 Sobic007G204700--Sobic006G158400 Sobic007G204700--Sobic001G462700 Sobic010G158500 Sobic010G158500 Sobic007G204700--Sobic010G158500 Sobic008G127933 Sobic008G127933 Sobic007G204700--Sobic008G127933 Sobic001G237900 Sobic001G237900 Sobic007G204700--Sobic001G237900 Sobic005G215400 Sobic005G215400 Sobic007G204700--Sobic005G215400 Sobic004G202400 Sobic004G202400 Sobic007G204700--Sobic004G202400 Sobic008G128200 Sobic008G128200 Sobic007G204700--Sobic008G128200 Sobic004G348800 Sobic004G348800 Sobic007G204700--Sobic004G348800 Sobic006G277600 Sobic006G277600 Sobic003G117600--Sobic006G277600 Sobic007G141500 Sobic007G141500 Sobic003G117600--Sobic007G141500 Sobic005G063100 Sobic005G063100 Sobic003G117600--Sobic005G063100 Sobic006G092500 Sobic006G092500 Sobic003G117600--Sobic006G092500 Sobic003G117600--Sobic005G206601 Sobic006G153100 Sobic006G153100 Sobic003G117600--Sobic006G153100 Sobic003G117600--Sobic001G325400 Sobic002G354100 Sobic002G354100 Sobic003G117600--Sobic002G354100 Sobic005G091500 Sobic005G091500 Sobic003G117600--Sobic005G091500 Sobic010G008400--Sobic002G176100 Sobic002G003800 Sobic002G003800 Sobic010G008400--Sobic002G003800 Sobic010G008400--Sobic003G319500 Sobic002G327300 Sobic002G327300 Sobic010G008400--Sobic002G327300 Sobic010G008400--Sobic004G046200 Sobic010G008400--Sobic001G500000 Sobic010G085800 Sobic010G085800 Sobic010G008400--Sobic010G085800 Sobic010G008400--Sobic002G017800 Sobic010G008400--Sobic009G111000 Sobic004G148200 Sobic004G148200 Sobic001G331200--Sobic004G148200 Sobic006G268800 Sobic006G268800 Sobic001G331200--Sobic006G268800 Sobic001G331200--Sobic002G017800 Sobic007G227300 Sobic007G227300 Sobic001G331200--Sobic007G227300 Sobic001G331200--Sobic002G247600 Sobic006G103000 Sobic006G103000 Sobic001G331200--Sobic006G103000 Sobic001G331200--Sobic009G111000 Sobic001G318500 Sobic001G318500 Sobic001G331200--Sobic001G318500 Sobic001G331200--Sobic005G091500 Sobic008G106700 Sobic008G106700 Sobic004G046200--Sobic008G106700 Sobic006G044100 Sobic006G044100 Sobic004G046200--Sobic006G044100 Sobic009G187200 Sobic009G187200 Sobic004G046200--Sobic009G187200 Sobic006G199800 Sobic006G199800 Sobic004G046200--Sobic006G199800 Sobic003G084400 Sobic003G084400 Sobic004G046200--Sobic003G084400 Sobic003G255200 Sobic003G255200 Sobic004G046200--Sobic003G255200 Sobic004G046200--Sobic001G500000 Sobic003G079400 Sobic003G079400 Sobic004G046200--Sobic003G079400 Sobic004G046200--Sobic009G111000
Octagon: transcription factors


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