Gene annotation
| Transcriptome id | Sobic.004G348400.1 |
|---|---|
| Synonym | DMR6, Sb04g037510 |
| Functional annotation | oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed |
| UniProt | C5XVZ4 |
| Pfam | PF03171 PF14226 |
| Panther DB | PTHR10209 PTHR10209:SF220 |
| NCBI CDD | KOG0143; Iron/ascorbate family oxidoreductases |
| KEGG Orthology | - |
| Gene Ontology | GO:0016491; oxidoreductase activity |
Orthologs (automatic annotation)
| TAIR | AT5G24530 : 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|---|---|
| RAP-DB (Rice) | LOC_Os07g07410.2 : oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed |
| MaizeGDB (Corn) | Zm00025a032779 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.004G348400 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.003G011600 | 3-methyl-2-oxobutanoate hydroxymethyltransferase, putative, expressed | K00606: 3-methyl-2-oxobutanoate hydroxymethyltransferase |
| 2 | Sobic.003G366600 | anthocyanidin 3-O-glucosyltransferase, putative, expressed | - |
| 3 | Sobic.003G368600 | terpene synthase, putative, expressed | - |
| 4 | Sobic.002G247600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os9bglu30 - beta-glucosidase, similar to Os4bglu12 exoglucanase, expressed | K01188: beta-glucosidase |
| 5 | Sobic.010G185000 | VQ domain containing protein, putative, expressed | - |
| 6 | Sobic.002G375400 | Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | K09286: EREBP-like factor |
| 7 | Sobic.004G176600 | no apical meristem protein, putative, expressed | - |
| 8 | Sobic.006G044100 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 9 | Sobic.006G243600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@peroxidase precursor, putative, expressed | K00430: peroxidase |
| 10 | Sobic.004G202400 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@high affinity nitrate transporter, putative, expressed | - |
| 11 | Sobic.006G125100 | ubiquitin family protein, putative, expressed | - |
| 12 | Sobic.003G255500 | expressed protein | - |
| 13 | Sobic.009G072900 | calmodulin-binding protein, putative, expressed | - |
| 14 | Sobic.010G001000 | expressed protein | - |
| 15 | Sobic.003G404600 | regulatory protein, putative, expressed | - |
| 16 | Sobic.009G240600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phospholipase, putative, expressed | - |
| 17 | Sobic.001G481400 | similar to AP2 domain containing protein(PubMedID : 24655390)@SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@similar to AP2 domain containing protein(PubMedID : 24655390)@Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed | K09286: EREBP-like factor |
| 18 | Sobic.006G197100 | DNA binding protein, putative, expressed | - |
| 19 | Sobic.001G503100 | "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed | - |
| 20 | Sobic.006G157900 | C2 domain containing protein, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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