Gene annotation
Transcriptome id Sobic.006G125100.1
Synonym Sb06g020540
Functional annotation ubiquitin family protein, putative, expressed
UniProt C5YAV6
Pfam PF00240
Panther DB PTHR10666 PTHR10666:SF127
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0005515; protein binding


Orthologs (automatic annotation)
TAIR AT5G14360 : Ubiquitin-like superfamily protein
RAP-DB (Rice) LOC_Os02g38410.1 : ubiquitin family protein, putative, expressed
MaizeGDB (Corn) Zm00025a010965 , Zm00025a021294
Brachypodium KQJ83212
Barley HORVU2Hr1G083680.3 , HORVU2Hr1G083680.2 , HORVU2Hr1G083680.1 , HORVU2Hr1G083700.4 , HORVU2Hr1G083700.2 , HORVU2Hr1G083700.3 , HORVU2Hr1G083700.1 , HORVU2Hr1G083660.1
Wheat TraesCS2A02G321800 , TraesCS2D02G341100 , TraesCS2A02G321900 , TraesCS2B02G360800 , TraesCS2A02G321700 , TraesCS2B02G360600 , TraesCS2B02G360700 , TraesCS2A02G322100 , TraesCS2D02G340900 , TraesCS2A02G322000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G503100 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed -
2 Sobic.010G063000 - -
3 Sobic.002G247600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Os9bglu30 - beta-glucosidase, similar to Os4bglu12 exoglucanase, expressed K01188: beta-glucosidase
4 Sobic.002G125700 similar to Aquaporin PIP2-6(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09872: aquaporin PIP
5 Sobic.010G185000 VQ domain containing protein, putative, expressed -
6 Sobic.004G348400 oxidoreductase, 2OG-Fe oxygenase family protein, putative, expressed -
7 Sobic.001G333400 SCP-like extracellular protein, expressed -
8 Sobic.003G255500 expressed protein -
9 Sobic.006G277600 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.001G462700 expressed protein -
11 Sobic.002G336700 nucleoside transporter, putative, expressed K15014: SLC29A1_2_3, solute carrier family 29 (equilibrative nucleoside transporter), member 1/2/3
12 Sobic.004G046200 sulfotransferase domain containing protein, expressed -
13 Sobic.010G110800 plastocyanin-like domain containing protein, putative, expressed -
14 Sobic.003G117600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@flowering promoting factor-like 1, putative, expressed -
15 Sobic.006G044100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
16 Sobic.009G187200 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
17 Sobic.002G375400 Not investigated(PubMedID : 23766026)@AP2 domain containing protein, expressed K09286: EREBP-like factor
18 Sobic.004G227800 CBS domain-containing protein, putative, expressed -
19 Sobic.008G172600 ATCHX, putative, expressed -
20 Sobic.003G255200 expressed protein -


Gene co-expression network
sample Sobic006G125100 Sobic006G125100 Sobic001G503100 Sobic001G503100 Sobic006G125100--Sobic001G503100 Sobic010G063000 Sobic010G063000 Sobic006G125100--Sobic010G063000 Sobic002G247600 Sobic002G247600 Sobic006G125100--Sobic002G247600 Sobic002G125700 Sobic002G125700 Sobic006G125100--Sobic002G125700 Sobic010G185000 Sobic010G185000 Sobic006G125100--Sobic010G185000 Sobic004G348400 Sobic004G348400 Sobic006G125100--Sobic004G348400 Sobic001G333400 Sobic001G333400 Sobic006G125100--Sobic001G333400 Sobic003G255500 Sobic003G255500 Sobic006G125100--Sobic003G255500 Sobic006G277600 Sobic006G277600 Sobic006G125100--Sobic006G277600 Sobic001G503100--Sobic002G125700 Sobic001G503100--Sobic006G277600 Sobic003G352300 Sobic003G352300 Sobic001G503100--Sobic003G352300 Sobic001G503100--Sobic006G125100 Sobic010G052700 Sobic010G052700 Sobic001G503100--Sobic010G052700 Sobic004G107700 Sobic004G107700 Sobic001G503100--Sobic004G107700 Sobic003G255200 Sobic003G255200 Sobic001G503100--Sobic003G255200 Sobic002G004900 Sobic002G004900 Sobic001G503100--Sobic002G004900 Sobic001G503100--Sobic003G255500 Sobic010G063000--Sobic006G125100 Sobic010G063000--Sobic002G125700 Sobic002G213600 Sobic002G213600 Sobic010G063000--Sobic002G213600 Sobic001G237900 Sobic001G237900 Sobic010G063000--Sobic001G237900 Sobic010G063000--Sobic001G503100 Sobic010G001000 Sobic010G001000 Sobic010G063000--Sobic010G001000 Sobic001G161500 Sobic001G161500 Sobic010G063000--Sobic001G161500 Sobic001G318500 Sobic001G318500 Sobic010G063000--Sobic001G318500 Sobic001G325400 Sobic001G325400 Sobic010G063000--Sobic001G325400 Sobic001G462700 Sobic001G462700 Sobic002G247600--Sobic001G462700 Sobic002G247600--Sobic010G185000 Sobic009G003600 Sobic009G003600 Sobic002G247600--Sobic009G003600 Sobic002G247600--Sobic004G348400 Sobic001G331200 Sobic001G331200 Sobic002G247600--Sobic001G331200 Sobic002G247600--Sobic001G333400 Sobic007G151300 Sobic007G151300 Sobic002G247600--Sobic007G151300 Sobic005G206601 Sobic005G206601 Sobic002G247600--Sobic005G206601 Sobic003G117600 Sobic003G117600 Sobic002G247600--Sobic003G117600 Sobic002G125700--Sobic003G255200 Sobic002G125700--Sobic001G503100 Sobic002G125700--Sobic003G352300 Sobic010G259600 Sobic010G259600 Sobic002G125700--Sobic010G259600 Sobic002G125700--Sobic001G325400 Sobic007G087200 Sobic007G087200 Sobic002G125700--Sobic007G087200 Sobic002G125700--Sobic004G107700 Sobic009G231000 Sobic009G231000 Sobic002G125700--Sobic009G231000 Sobic002G125700--Sobic010G063000 Sobic010G185000--Sobic002G247600 Sobic005G018700 Sobic005G018700 Sobic010G185000--Sobic005G018700 Sobic007G227300 Sobic007G227300 Sobic010G185000--Sobic007G227300 Sobic009G240600 Sobic009G240600 Sobic010G185000--Sobic009G240600 Sobic010G185000--Sobic004G348400 Sobic002G375400 Sobic002G375400 Sobic010G185000--Sobic002G375400 Sobic001G481400 Sobic001G481400 Sobic010G185000--Sobic001G481400 Sobic010G185000--Sobic005G206601 Sobic010G185000--Sobic007G151300 Sobic003G011600 Sobic003G011600 Sobic004G348400--Sobic003G011600 Sobic003G366600 Sobic003G366600 Sobic004G348400--Sobic003G366600 Sobic003G368600 Sobic003G368600 Sobic004G348400--Sobic003G368600 Sobic004G348400--Sobic002G247600 Sobic004G348400--Sobic010G185000 Sobic004G348400--Sobic002G375400 Sobic004G176600 Sobic004G176600 Sobic004G348400--Sobic004G176600 Sobic006G044100 Sobic006G044100 Sobic004G348400--Sobic006G044100 Sobic006G243600 Sobic006G243600 Sobic004G348400--Sobic006G243600 Sobic005G011200 Sobic005G011200 Sobic001G333400--Sobic005G011200 Sobic001G333400--Sobic010G052700 Sobic001G333400--Sobic002G247600 Sobic007G141500 Sobic007G141500 Sobic001G333400--Sobic007G141500 Sobic001G333400--Sobic001G503100 Sobic001G333400--Sobic002G004900 Sobic001G333400--Sobic006G125100 Sobic002G336700 Sobic002G336700 Sobic001G333400--Sobic002G336700 Sobic001G187200 Sobic001G187200 Sobic001G333400--Sobic001G187200 Sobic003G255500--Sobic001G503100 Sobic003G255500--Sobic003G255200 Sobic006G199800 Sobic006G199800 Sobic003G255500--Sobic006G199800 Sobic001G449600 Sobic001G449600 Sobic003G255500--Sobic001G449600 Sobic003G255500--Sobic006G044100 Sobic009G187200 Sobic009G187200 Sobic003G255500--Sobic009G187200 Sobic003G255500--Sobic004G107700 Sobic003G255500--Sobic004G348400 Sobic003G255500--Sobic001G161500 Sobic002G354100 Sobic002G354100 Sobic006G277600--Sobic002G354100 Sobic001G231700 Sobic001G231700 Sobic006G277600--Sobic001G231700 Sobic006G277600--Sobic003G117600 Sobic006G277600--Sobic007G227300 Sobic006G099900 Sobic006G099900 Sobic006G277600--Sobic006G099900 Sobic006G277600--Sobic001G503100 Sobic007G184600 Sobic007G184600 Sobic006G277600--Sobic007G184600 Sobic009G111000 Sobic009G111000 Sobic006G277600--Sobic009G111000 Sobic006G277600--Sobic005G206601
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.