Gene annotation
Transcriptome id Sobic.008G172600.1
Synonym Sb08g021730, CHX19, ATCHX19
Functional annotation ATCHX, putative, expressed
UniProt C5YSC2
Pfam PF00999
Panther DB PTHR32468 PTHR32468:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0016021; integral component of membrane GO:0015299solute:proton antiporter activity GO:0006812cation transport


Orthologs (automatic annotation)
TAIR AT3G17630 : cation/H+ exchanger 19
RAP-DB (Rice) LOC_Os12g42200.1 : ATCHX, putative, expressed
MaizeGDB (Corn) Zm00025a044040 , Zm00025a004711 , Zm00025a004710 , Zm00025a040913 , Zm00025a037802
Brachypodium KQJ85768 , KQJ85769 , KQK12360 , KQJ92501
Barley HORVU5Hr1G008270.1 , HORVU5Hr1G008270.2 , HORVU5Hr1G008270.3 , HORVU5Hr1G008270.4 , HORVU5Hr1G008270.5 , HORVU5Hr1G008270.6 , HORVU5Hr1G008270.7 , HORVU5Hr1G115390.2 , HORVU5Hr1G115390.3 , HORVU5Hr1G115390.1
Wheat TraesCS5D02G039800 , TraesCS5D02G505000 , TraesCS5A02G031700 , TraesCS5D02G039900 , TraesCS5B02G031800 , TraesCS4A02G368300 , TraesCS5A02G031600
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.009G187200 UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed -
2 Sobic.003G255200 expressed protein -
3 Sobic.002G004900 transporter family protein, putative, expressed -
4 Sobic.004G046200 sulfotransferase domain containing protein, expressed -
5 Sobic.006G044100 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
6 Sobic.003G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
7 Sobic.001G325400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
8 Sobic.001G503100 "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed -
9 Sobic.002G125700 similar to Aquaporin PIP2-6(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09872: aquaporin PIP
10 Sobic.004G107700 expressed protein -
11 Sobic.002G017800 expressed protein -
12 Sobic.003G363900 glycosyl hydrolase, putative, expressed K01183: chitinase
13 Sobic.001G318500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
14 Sobic.002G034800 - -
15 Sobic.003G255500 expressed protein -
16 Sobic.001G128500 LTPL73 - Protease inhibitor/seed storage/LTP family protein precursor, expressed -
17 Sobic.003G016100 expressed protein -
18 Sobic.005G183100 sulfotransferase domain containing protein, expressed -
19 Sobic.004G340900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@OsFBX70 - F-box domain containing protein, expressed -
20 Sobic.004G176600 no apical meristem protein, putative, expressed -


Gene co-expression network
sample Sobic008G172600 Sobic008G172600 Sobic009G187200 Sobic009G187200 Sobic008G172600--Sobic009G187200 Sobic003G255200 Sobic003G255200 Sobic008G172600--Sobic003G255200 Sobic002G004900 Sobic002G004900 Sobic008G172600--Sobic002G004900 Sobic004G046200 Sobic004G046200 Sobic008G172600--Sobic004G046200 Sobic006G044100 Sobic006G044100 Sobic008G172600--Sobic006G044100 Sobic003G280200 Sobic003G280200 Sobic008G172600--Sobic003G280200 Sobic001G325400 Sobic001G325400 Sobic008G172600--Sobic001G325400 Sobic001G503100 Sobic001G503100 Sobic008G172600--Sobic001G503100 Sobic002G125700 Sobic002G125700 Sobic008G172600--Sobic002G125700 Sobic009G187200--Sobic008G172600 Sobic009G187200--Sobic004G046200 Sobic009G187200--Sobic006G044100 Sobic001G128500 Sobic001G128500 Sobic009G187200--Sobic001G128500 Sobic010G067400 Sobic010G067400 Sobic009G187200--Sobic010G067400 Sobic003G016100 Sobic003G016100 Sobic009G187200--Sobic003G016100 Sobic009G187200--Sobic003G255200 Sobic009G187200--Sobic001G503100 Sobic003G255500 Sobic003G255500 Sobic009G187200--Sobic003G255500 Sobic004G107700 Sobic004G107700 Sobic003G255200--Sobic004G107700 Sobic003G255200--Sobic002G125700 Sobic003G255200--Sobic008G172600 Sobic003G255200--Sobic004G046200 Sobic010G259600 Sobic010G259600 Sobic003G255200--Sobic010G259600 Sobic001G449600 Sobic001G449600 Sobic003G255200--Sobic001G449600 Sobic007G087200 Sobic007G087200 Sobic003G255200--Sobic007G087200 Sobic003G255200--Sobic001G503100 Sobic002G034800 Sobic002G034800 Sobic003G255200--Sobic002G034800 Sobic001G318500 Sobic001G318500 Sobic002G004900--Sobic001G318500 Sobic002G004900--Sobic008G172600 Sobic002G017800 Sobic002G017800 Sobic002G004900--Sobic002G017800 Sobic002G004900--Sobic003G280200 Sobic002G004900--Sobic001G503100 Sobic002G302500 Sobic002G302500 Sobic002G004900--Sobic002G302500 Sobic009G009600 Sobic009G009600 Sobic002G004900--Sobic009G009600 Sobic002G004900--Sobic001G325400 Sobic005G011200 Sobic005G011200 Sobic002G004900--Sobic005G011200 Sobic008G106700 Sobic008G106700 Sobic004G046200--Sobic008G106700 Sobic004G046200--Sobic006G044100 Sobic004G046200--Sobic009G187200 Sobic006G199800 Sobic006G199800 Sobic004G046200--Sobic006G199800 Sobic003G084400 Sobic003G084400 Sobic004G046200--Sobic003G084400 Sobic004G046200--Sobic003G255200 Sobic001G500000 Sobic001G500000 Sobic004G046200--Sobic001G500000 Sobic003G079400 Sobic003G079400 Sobic004G046200--Sobic003G079400 Sobic009G111000 Sobic009G111000 Sobic004G046200--Sobic009G111000 Sobic006G044100--Sobic004G046200 Sobic004G176600 Sobic004G176600 Sobic006G044100--Sobic004G176600 Sobic006G044100--Sobic009G187200 Sobic001G481400 Sobic001G481400 Sobic006G044100--Sobic001G481400 Sobic006G044100--Sobic008G106700 Sobic003G366600 Sobic003G366600 Sobic006G044100--Sobic003G366600 Sobic006G044100--Sobic008G172600 Sobic006G277600 Sobic006G277600 Sobic006G044100--Sobic006G277600 Sobic006G044100--Sobic003G255200 Sobic003G417700 Sobic003G417700 Sobic003G280200--Sobic003G417700 Sobic002G415100 Sobic002G415100 Sobic003G280200--Sobic002G415100 Sobic009G139400 Sobic009G139400 Sobic003G280200--Sobic009G139400 Sobic003G297600 Sobic003G297600 Sobic003G280200--Sobic003G297600 Sobic009G077800 Sobic009G077800 Sobic003G280200--Sobic009G077800 Sobic005G029200 Sobic005G029200 Sobic003G280200--Sobic005G029200 Sobic003G364000 Sobic003G364000 Sobic003G280200--Sobic003G364000 Sobic003G280200--Sobic002G004900 Sobic003G280200--Sobic002G034800 Sobic006G039100 Sobic006G039100 Sobic001G325400--Sobic006G039100 Sobic001G325400--Sobic009G111000 Sobic001G325400--Sobic002G125700 Sobic001G462700 Sobic001G462700 Sobic001G325400--Sobic001G462700 Sobic001G325400--Sobic009G077800 Sobic001G325400--Sobic002G017800 Sobic009G231000 Sobic009G231000 Sobic001G325400--Sobic009G231000 Sobic001G325400--Sobic007G087200 Sobic003G117600 Sobic003G117600 Sobic001G325400--Sobic003G117600 Sobic001G503100--Sobic002G125700 Sobic001G503100--Sobic006G277600 Sobic003G352300 Sobic003G352300 Sobic001G503100--Sobic003G352300 Sobic006G125100 Sobic006G125100 Sobic001G503100--Sobic006G125100 Sobic010G052700 Sobic010G052700 Sobic001G503100--Sobic010G052700 Sobic001G503100--Sobic004G107700 Sobic001G503100--Sobic003G255200 Sobic001G503100--Sobic002G004900 Sobic001G503100--Sobic003G255500 Sobic002G125700--Sobic003G255200 Sobic002G125700--Sobic001G503100 Sobic002G125700--Sobic003G352300 Sobic002G125700--Sobic010G259600 Sobic002G125700--Sobic001G325400 Sobic002G125700--Sobic007G087200 Sobic002G125700--Sobic004G107700 Sobic002G125700--Sobic009G231000 Sobic010G063000 Sobic010G063000 Sobic002G125700--Sobic010G063000
Octagon: transcription factors


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