Gene annotation
| Transcriptome id | Sobic.003G255200.2,Sobic.003G255200.1 |
|---|---|
| Synonym | Sb03g031020 |
| Functional annotation | expressed protein |
| UniProt | A0A1B6Q5E3 , A0A1B6Q5A3 |
| Pfam | - |
| Panther DB | PTHR33388:SF3 PTHR33388 PTHR33388 PTHR33388:SF3 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G20080 : - |
|---|---|
| RAP-DB (Rice) | LOC_Os01g48530.1 : expressed protein |
| MaizeGDB (Corn) | Zm00025a028064 , Zm00025a038824 |
| Brachypodium | KQK09173 |
| Barley | HORVU3Hr1G062320.1 |
| Wheat | TraesCS3A02G269500 , TraesCS3B02G303500 , TraesCS3D02G269300 , TraesCS3D02G269300 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.004G107700 | expressed protein | - |
| 2 | Sobic.002G125700 | similar to Aquaporin PIP2-6(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed | K09872: aquaporin PIP |
| 3 | Sobic.008G172600 | ATCHX, putative, expressed | - |
| 4 | Sobic.004G046200 | sulfotransferase domain containing protein, expressed | - |
| 5 | Sobic.010G259600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed | - |
| 6 | Sobic.001G449600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@non-symbiotic hemoglobin 2, putative, expressed | - |
| 7 | Sobic.007G087200 | MBTB21 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with Meprin and TRAF Homology MATH domain, expressed | K10523: speckle-type POZ protein |
| 8 | Sobic.001G503100 | "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed | - |
| 9 | Sobic.002G034800 | - | - |
| 10 | Sobic.009G217700 | - | - |
| 11 | Sobic.003G255500 | expressed protein | - |
| 12 | Sobic.003G352300 | triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed | K01803: TPI, triosephosphate isomerase (TIM) |
| 13 | Sobic.004G176600 | no apical meristem protein, putative, expressed | - |
| 14 | Sobic.006G199800 | Orthologous gene to AtMYB58 and AtMYB63(PubMedID : 26712107)@MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 15 | Sobic.006G044100 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed | - |
| 16 | Sobic.003G417800 | down-regulated TF in developmental senescence(PubMedID : 27586543)@histone-like transcription factor and archaeal histone, putative, expressed | - |
| 17 | Sobic.001G325400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed | - |
| 18 | Sobic.005G183100 | sulfotransferase domain containing protein, expressed | - |
| 19 | Sobic.009G187200 | UDP-glucoronosyl and UDP-glucosyl transferase domain containing protein, expressed | - |
| 20 | Sobic.001G082600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@bHelix-loop-helix transcription factor, putative, expressed | - |
Gene co-expression network
Octagon: transcription factors
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