Gene annotation
| Transcriptome id | Sobic.001G449600.1 |
|---|---|
| Synonym | ARATHGLB1, GLB1, NSHB1, Sb01g042260, AHB1, HB1, ATGLB1 |
| Functional annotation | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543) Oxygen binding /transporter (Zm) (PubMedID : 27208977) Oxygen binding /transporter (Zm) (PubMedID : 27208977) non-symbiotic hemoglobin 2, putative, expressed |
| UniProt | A0A1B6QPK7 |
| Pfam | PF00042 |
| Panther DB | PTHR22924 |
| NCBI CDD | - |
| KEGG Orthology | - |
| Gene Ontology | - |
Orthologs (automatic annotation)
| TAIR | AT2G16060 : hemoglobin 1 |
|---|---|
| RAP-DB (Rice) | LOC_Os03g12510.1 : non-symbiotic hemoglobin 2, putative, expressed |
| MaizeGDB (Corn) | Zm00025a053000 |
| Brachypodium | - |
| Barley | HORVU4Hr1G066200.1 , HORVU4Hr1G066240.1 |
| Wheat | TraesCS4B02G237300 , TraesCS4D02G238600 , TraesCS4A02G061700 , TraesCS1D02G340600 |
| Populus | - |
JBrowse
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.009G217700 | - | - |
| 2 | Sobic.003G255200 | expressed protein | - |
| 3 | Sobic.005G005600 | prenylated rab acceptor, putative, expressed | - |
| 4 | Sobic.003G319700 | NADPH-dependent FMN reductase domain containing protein, expressed | K03809: NAD(P)H dehydrogenase (quinone) |
| 5 | Sobic.007G166000 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@regulation of Al tolerance genes and proton tolerance genes(PubMedID : 29541086)@ZOS8-14 - C2H2 zinc finger protein, expressed | - |
| 6 | Sobic.002G125700 | similar to Aquaporin PIP2-6(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed | K09872: aquaporin PIP |
| 7 | Sobic.002G034800 | - | - |
| 8 | Sobic.003G255500 | expressed protein | - |
| 9 | Sobic.009G016300 | ZOS5-02 - C2H2 zinc finger protein, expressed | - |
| 10 | Sobic.010G259600 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein O-methyltransferase ZRP4 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed | - |
| 11 | Sobic.006G199800 | Orthologous gene to AtMYB58 and AtMYB63(PubMedID : 26712107)@MYB family transcription factor, putative, expressed | K09422: transcription factor MYB, plant |
| 12 | Sobic.005G013600 | WRKY46, expressed | - |
| 13 | Sobic.004G107700 | expressed protein | - |
| 14 | Sobic.001G503100 | "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed | - |
| 15 | Sobic.003G364000 | glycosyl hydrolase, putative, expressed | K01183: chitinase |
| 16 | Sobic.003G352300 | triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed | K01803: TPI, triosephosphate isomerase (TIM) |
| 17 | Sobic.001G433900 | PLA IIIA/PLP7, putative, expressed | - |
| 18 | Sobic.009G139700 | - | - |
| 19 | Sobic.004G217800 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@ammonium transporter protein, putative, expressed | K03320: amt, AMT, ammonium transporter, Amt family |
| 20 | Sobic.006G132900 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@expressed protein | - |
Gene co-expression network
Octagon: transcription factors
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