Gene annotation
Transcriptome id Sobic.003G364000.1
Synonym CHIA, ATCHIA, Sb03g040570
Functional annotation glycosyl hydrolase, putative, expressed
UniProt C5XQI9
Pfam PF00704
Panther DB PTHR11177
NCBI CDD -
KEGG Orthology K01183; chitinase
Gene Ontology GO:0005975; carbohydrate metabolic process GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds


Orthologs (automatic annotation)
TAIR AT5G24090 : chitinase A
RAP-DB (Rice) LOC_Os01g64100.1 : glycosyl hydrolase, putative, expressed
MaizeGDB (Corn) Zm00025a026760 , Zm00025a030311 , Zm00025a026759
Brachypodium KQK09026 , PNT72617 , KQK09284 , KQK10704 , KQK10703 , KQK10702 , PNT72403
Barley HORVU3Hr1G084230.2 , HORVU3Hr1G084230.1 , HORVU3Hr1G084280.1 , HORVU3Hr1G087870.1 , HORVU3Hr1G084220.1 , HORVU3Hr1G084250.1 , HORVU3Hr1G084220.3 , HORVU3Hr1G084220.2 , HORVU3Hr1G083670.2
Wheat TraesCS3A02G373600 , TraesCS3B02G294900 , TraesCS3B02G405900 , TraesCS3A02G261700 , TraesCS3D02G366400 , TraesCS3D02G261700
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.010G088700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@phosphate-induced protein 1 conserved region domain containing protein, expressed -
2 Sobic.009G217700 - -
3 Sobic.010G156500 expressed protein -
4 Sobic.003G364300 similar to Basic class III chitinase OsChib3b precursor(PubMedID : 29862293)@glycosyl hydrolase, putative, expressed K01183: chitinase
5 Sobic.003G280200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein -
6 Sobic.010G259500 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transferase family protein, putative, expressed -
7 Sobic.005G213500 leucoanthocyanidin dioxygenase, putative, expressed -
8 Sobic.002G034800 - -
9 Sobic.003G382600 ARGOS, putative, expressed -
10 Sobic.009G139700 - -
11 Sobic.010G066700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Protein anthranilate N-benzoyltransferase protein 1 (Os)(PubMedID : 27208977)@transferase family protein, putative, expressed -
12 Sobic.010G052700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
13 Sobic.002G004900 transporter family protein, putative, expressed -
14 Sobic.002G353900 "Belonging to the Sdw3 locus, Sbi_sdw3"(PubMedID : 20464438)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
15 Sobic.009G139400 expressed protein -
16 Sobic.002G338500 sugar transporter 1(PubMedID : 26465154)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@transporter family protein, putative, expressed -
17 Sobic.001G449600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@Oxygen binding /transporter (Zm)(PubMedID : 27208977)@non-symbiotic hemoglobin 2, putative, expressed -
18 Sobic.009G231000 - -
19 Sobic.003G319700 NADPH-dependent FMN reductase domain containing protein, expressed K03809: NAD(P)H dehydrogenase (quinone)
20 Sobic.004G107700 expressed protein -


Gene co-expression network
sample Sobic003G364000 Sobic003G364000 Sobic010G088700 Sobic010G088700 Sobic003G364000--Sobic010G088700 Sobic009G217700 Sobic009G217700 Sobic003G364000--Sobic009G217700 Sobic010G156500 Sobic010G156500 Sobic003G364000--Sobic010G156500 Sobic003G364300 Sobic003G364300 Sobic003G364000--Sobic003G364300 Sobic003G280200 Sobic003G280200 Sobic003G364000--Sobic003G280200 Sobic010G259500 Sobic010G259500 Sobic003G364000--Sobic010G259500 Sobic005G213500 Sobic005G213500 Sobic003G364000--Sobic005G213500 Sobic002G034800 Sobic002G034800 Sobic003G364000--Sobic002G034800 Sobic003G382600 Sobic003G382600 Sobic003G364000--Sobic003G382600 Sobic010G088700--Sobic003G364000 Sobic010G088700--Sobic010G259500 Sobic010G088700--Sobic002G034800 Sobic010G088700--Sobic009G217700 Sobic001G365100 Sobic001G365100 Sobic010G088700--Sobic001G365100 Sobic001G433900 Sobic001G433900 Sobic010G088700--Sobic001G433900 Sobic003G319700 Sobic003G319700 Sobic010G088700--Sobic003G319700 Sobic010G066700 Sobic010G066700 Sobic010G088700--Sobic010G066700 Sobic010G088700--Sobic005G213500 Sobic001G449600 Sobic001G449600 Sobic009G217700--Sobic001G449600 Sobic009G217700--Sobic003G364000 Sobic009G217700--Sobic003G319700 Sobic003G255200 Sobic003G255200 Sobic009G217700--Sobic003G255200 Sobic009G139700 Sobic009G139700 Sobic009G217700--Sobic009G139700 Sobic004G107700 Sobic004G107700 Sobic009G217700--Sobic004G107700 Sobic005G005600 Sobic005G005600 Sobic009G217700--Sobic005G005600 Sobic009G217700--Sobic002G034800 Sobic005G013600 Sobic005G013600 Sobic009G217700--Sobic005G013600 Sobic010G156500--Sobic003G364300 Sobic002G338500 Sobic002G338500 Sobic010G156500--Sobic002G338500 Sobic010G156500--Sobic003G364000 Sobic010G156500--Sobic003G382600 Sobic010G156500--Sobic005G213500 Sobic001G279500 Sobic001G279500 Sobic010G156500--Sobic001G279500 Sobic002G302500 Sobic002G302500 Sobic010G156500--Sobic002G302500 Sobic010G156500--Sobic003G280200 Sobic009G231000 Sobic009G231000 Sobic010G156500--Sobic009G231000 Sobic003G364300--Sobic010G156500 Sobic003G364300--Sobic009G231000 Sobic003G364300--Sobic002G338500 Sobic003G364300--Sobic003G364000 Sobic007G008100 Sobic007G008100 Sobic003G364300--Sobic007G008100 Sobic002G042000 Sobic002G042000 Sobic003G364300--Sobic002G042000 Sobic003G364300--Sobic003G382600 Sobic001G054500 Sobic001G054500 Sobic003G364300--Sobic001G054500 Sobic003G364300--Sobic002G302500 Sobic003G417700 Sobic003G417700 Sobic003G280200--Sobic003G417700 Sobic002G415100 Sobic002G415100 Sobic003G280200--Sobic002G415100 Sobic009G139400 Sobic009G139400 Sobic003G280200--Sobic009G139400 Sobic003G297600 Sobic003G297600 Sobic003G280200--Sobic003G297600 Sobic009G077800 Sobic009G077800 Sobic003G280200--Sobic009G077800 Sobic005G029200 Sobic005G029200 Sobic003G280200--Sobic005G029200 Sobic003G280200--Sobic003G364000 Sobic002G004900 Sobic002G004900 Sobic003G280200--Sobic002G004900 Sobic003G280200--Sobic002G034800 Sobic010G259500--Sobic001G365100 Sobic001G402200 Sobic001G402200 Sobic010G259500--Sobic001G402200 Sobic007G039600 Sobic007G039600 Sobic010G259500--Sobic007G039600 Sobic010G259500--Sobic003G364000 Sobic007G155100 Sobic007G155100 Sobic010G259500--Sobic007G155100 Sobic003G307801 Sobic003G307801 Sobic010G259500--Sobic003G307801 Sobic010G259500--Sobic010G066700 Sobic010G259500--Sobic010G088700 Sobic005G051500 Sobic005G051500 Sobic010G259500--Sobic005G051500 Sobic005G213500--Sobic010G156500 Sobic005G213500--Sobic003G364000 Sobic005G213600 Sobic005G213600 Sobic005G213500--Sobic005G213600 Sobic005G213500--Sobic003G364300 Sobic006G132900 Sobic006G132900 Sobic005G213500--Sobic006G132900 Sobic005G213500--Sobic002G338500 Sobic010G043900 Sobic010G043900 Sobic005G213500--Sobic010G043900 Sobic005G213500--Sobic010G259500 Sobic005G213500--Sobic005G005600 Sobic002G034800--Sobic010G066700 Sobic002G034800--Sobic009G139400 Sobic002G034800--Sobic004G107700 Sobic002G034800--Sobic003G280200 Sobic002G034800--Sobic009G077800 Sobic002G034800--Sobic003G255200 Sobic001G119400 Sobic001G119400 Sobic002G034800--Sobic001G119400 Sobic009G183400 Sobic009G183400 Sobic002G034800--Sobic009G183400 Sobic010G259600 Sobic010G259600 Sobic002G034800--Sobic010G259600 Sobic002G055700 Sobic002G055700 Sobic003G382600--Sobic002G055700 Sobic004G189400 Sobic004G189400 Sobic003G382600--Sobic004G189400 Sobic003G382600--Sobic002G338500 Sobic002G353900 Sobic002G353900 Sobic003G382600--Sobic002G353900 Sobic003G303100 Sobic003G303100 Sobic003G382600--Sobic003G303100 Sobic004G237800 Sobic004G237800 Sobic003G382600--Sobic004G237800 Sobic005G091500 Sobic005G091500 Sobic003G382600--Sobic005G091500 Sobic008G050600 Sobic008G050600 Sobic003G382600--Sobic008G050600 Sobic003G043600 Sobic003G043600 Sobic003G382600--Sobic003G043600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.