Gene annotation
| Transcriptome id | Sobic.010G052700.1 |
|---|---|
| Synonym | Sb10g004590, AXR5, auxin/indole-3-acetic acid (Aux/IAA), SbIAA24, IAA1 |
| Functional annotation | "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA treatment" (PubMedID : 20499123) OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed |
| UniProt | A0A194YIG7 |
| Pfam | PF02309 |
| Panther DB | PTHR31734 PTHR31734:SF38 |
| NCBI CDD | - |
| KEGG Orthology | K14484; auxin-responsive protein IAA |
| Gene Ontology | GO:0006355; regulation of transcription, DNA-templated GO:0005634nucleus |
Orthologs (automatic annotation)
| TAIR | AT4G29080 : phytochrome-associated protein 2 |
|---|---|
| RAP-DB (Rice) | LOC_Os06g07040.1 : OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed |
| MaizeGDB (Corn) | Zm00025a049903 , Zm00025a041627 |
| Brachypodium | - |
| Barley | - |
| Wheat | - |
| Populus | - |
JBrowse
| Sobic.010G052700 |
Expression pattern by RNA-Seq analysis
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Find similar expressed genes
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| Rank | Gene | Function | KEGG orthology |
|---|---|---|---|
| 1 | Sobic.001G503100 | "domain confirmed by Pfam database, expressed in root, expression induced by IAA and BR treatments"(PubMedID : 20499123)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@DUF260 domain containing protein, putative, expressed | - |
| 2 | Sobic.003G087300 | nuclease PA3, putative, expressed | - |
| 3 | Sobic.001G333400 | SCP-like extracellular protein, expressed | - |
| 4 | Sobic.003G280200 | "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@expressed protein | - |
| 5 | Sobic.007G141500 | chorismate mutase, chloroplast precursor, putative, expressed | K01850: chorismate mutase |
| 6 | Sobic.005G011200 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 7 | Sobic.003G364000 | glycosyl hydrolase, putative, expressed | K01183: chitinase |
| 8 | Sobic.002G004900 | transporter family protein, putative, expressed | - |
| 9 | Sobic.002G125700 | similar to Aquaporin PIP2-6(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed | K09872: aquaporin PIP |
| 10 | Sobic.004G107700 | expressed protein | - |
| 11 | Sobic.009G077800 | expressed protein | - |
| 12 | Sobic.002G034800 | - | - |
| 13 | Sobic.002G199650 | - | - |
| 14 | Sobic.002G416600 | peroxidase precursor, putative, expressed | K00430: peroxidase |
| 15 | Sobic.003G352300 | triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed | K01803: TPI, triosephosphate isomerase (TIM) |
| 16 | Sobic.001G070800 | expressed protein | - |
| 17 | Sobic.001G325400 | SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed | - |
| 18 | Sobic.003G252800 | hypothetical protein | - |
| 19 | Sobic.001G252300 | pectinesterase, putative, expressed | K01051: pectinesterase |
| 20 | Sobic.010G009300 | 6-phosphogluconate dehydrogenase, decarboxylating, putative, expressed | K00033: PGD, gnd, 6-phosphogluconate dehydrogenase |
Gene co-expression network
Octagon: transcription factors
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