Gene annotation
Transcriptome id Sobic.003G087300.1
Synonym ENDO2, Sb03g007340
Functional annotation nuclease PA3, putative, expressed
UniProt C5XQW7
Pfam PF02265
Panther DB PTHR33146 PTHR33146:SF2
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0006308; DNA catabolic process GO:0004519endonuclease activity GO:0003676nucleic acid binding


Orthologs (automatic annotation)
TAIR AT1G68290 : endonuclease 2
RAP-DB (Rice) LOC_Os01g03740.1 : nuclease PA3, putative, expressed
MaizeGDB (Corn) Zm00025a023639
Brachypodium KQK02515
Barley -
Wheat TraesCS3D02G036700 , TraesCS5A02G177000 , TraesCS3B02G039500 , TraesCS5A02G330300 , TraesCS6A02G254400 , TraesCS3A02G044100 , TraesCS2D02G149800
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.002G416600 peroxidase precursor, putative, expressed K00430: peroxidase
2 Sobic.010G052700 "domain confirmed by Pfam database, expression supported by NCBI EST database, expressed in leaf, expression induced by IAA treatment"(PubMedID : 20499123)@OsIAA20 - Auxin-responsive Aux/IAA gene family member, expressed K14484: auxin-responsive protein IAA
3 Sobic.010G239300 oryzain beta chain precursor, putative, expressed -
4 Sobic.007G141500 chorismate mutase, chloroplast precursor, putative, expressed K01850: chorismate mutase
5 Sobic.006G039100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@RALFL36 - Rapid ALkalinization Factor RALF family protein precursor, expressed -
6 Sobic.004G166700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Beta-fructofuranosidase, cell wall Invertase 2 (Os)"(PubMedID : 27208977)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
7 Sobic.009G231000 - -
8 Sobic.002G125700 similar to Aquaporin PIP2-6(PubMedID : 29862293)@SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@aquaporin protein, putative, expressed K09872: aquaporin PIP
9 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
10 Sobic.001G070800 expressed protein -
11 Sobic.004G245500 expressed protein -
12 Sobic.001G025101 - -
13 Sobic.001G025300 hydrolase, alpha/beta fold family domain containing protein, expressed -
14 Sobic.001G325400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@UDP-glucoronosyl/UDP-glucosyl transferase, putative, expressed -
15 Sobic.002G415100 POEI50 - Pollen Ole e I allergen and extensin family protein precursor, expressed -
16 Sobic.005G051200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
17 Sobic.003G297600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor 2, putative, expressed -
18 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
19 Sobic.003G088500 multicopper oxidase domain containing protein, expressed -
20 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease


Gene co-expression network
sample Sobic003G087300 Sobic003G087300 Sobic002G416600 Sobic002G416600 Sobic003G087300--Sobic002G416600 Sobic010G052700 Sobic010G052700 Sobic003G087300--Sobic010G052700 Sobic010G239300 Sobic010G239300 Sobic003G087300--Sobic010G239300 Sobic007G141500 Sobic007G141500 Sobic003G087300--Sobic007G141500 Sobic006G039100 Sobic006G039100 Sobic003G087300--Sobic006G039100 Sobic004G166700 Sobic004G166700 Sobic003G087300--Sobic004G166700 Sobic009G231000 Sobic009G231000 Sobic003G087300--Sobic009G231000 Sobic002G125700 Sobic002G125700 Sobic003G087300--Sobic002G125700 Sobic001G252300 Sobic001G252300 Sobic003G087300--Sobic001G252300 Sobic002G416600--Sobic003G087300 Sobic005G051200 Sobic005G051200 Sobic002G416600--Sobic005G051200 Sobic001G317200 Sobic001G317200 Sobic002G416600--Sobic001G317200 Sobic001G025300 Sobic001G025300 Sobic002G416600--Sobic001G025300 Sobic001G070800 Sobic001G070800 Sobic002G416600--Sobic001G070800 Sobic002G416600--Sobic004G166700 Sobic008G050600 Sobic008G050600 Sobic002G416600--Sobic008G050600 Sobic002G416600--Sobic001G252300 Sobic002G416600--Sobic010G239300 Sobic001G503100 Sobic001G503100 Sobic010G052700--Sobic001G503100 Sobic010G052700--Sobic003G087300 Sobic001G333400 Sobic001G333400 Sobic010G052700--Sobic001G333400 Sobic003G280200 Sobic003G280200 Sobic010G052700--Sobic003G280200 Sobic010G052700--Sobic007G141500 Sobic005G011200 Sobic005G011200 Sobic010G052700--Sobic005G011200 Sobic003G364000 Sobic003G364000 Sobic010G052700--Sobic003G364000 Sobic002G004900 Sobic002G004900 Sobic010G052700--Sobic002G004900 Sobic010G052700--Sobic002G125700 Sobic002G415100 Sobic002G415100 Sobic010G239300--Sobic002G415100 Sobic010G239300--Sobic001G317200 Sobic009G128700 Sobic009G128700 Sobic010G239300--Sobic009G128700 Sobic010G084400 Sobic010G084400 Sobic010G239300--Sobic010G084400 Sobic010G239300--Sobic002G416600 Sobic010G239300--Sobic003G087300 Sobic007G145600 Sobic007G145600 Sobic010G239300--Sobic007G145600 Sobic006G099900 Sobic006G099900 Sobic010G239300--Sobic006G099900 Sobic005G101800 Sobic005G101800 Sobic010G239300--Sobic005G101800 Sobic003G117600 Sobic003G117600 Sobic007G141500--Sobic003G117600 Sobic006G153100 Sobic006G153100 Sobic007G141500--Sobic006G153100 Sobic007G141500--Sobic003G087300 Sobic007G141500--Sobic002G416600 Sobic007G141500--Sobic002G125700 Sobic007G141500--Sobic004G166700 Sobic001G444400 Sobic001G444400 Sobic007G141500--Sobic001G444400 Sobic001G325400 Sobic001G325400 Sobic007G141500--Sobic001G325400 Sobic007G141500--Sobic010G052700 Sobic006G039100--Sobic001G325400 Sobic006G039100--Sobic009G231000 Sobic001G462700 Sobic001G462700 Sobic006G039100--Sobic001G462700 Sobic004G189500 Sobic004G189500 Sobic006G039100--Sobic004G189500 Sobic006G039100--Sobic003G087300 Sobic006G039100--Sobic002G416600 Sobic002G366600 Sobic002G366600 Sobic006G039100--Sobic002G366600 Sobic004G148100 Sobic004G148100 Sobic006G039100--Sobic004G148100 Sobic009G077800 Sobic009G077800 Sobic006G039100--Sobic009G077800 Sobic004G166700--Sobic001G252300 Sobic009G229000 Sobic009G229000 Sobic004G166700--Sobic009G229000 Sobic004G166700--Sobic002G416600 Sobic009G234100 Sobic009G234100 Sobic004G166700--Sobic009G234100 Sobic004G166700--Sobic005G051200 Sobic004G208700 Sobic004G208700 Sobic004G166700--Sobic004G208700 Sobic006G092500 Sobic006G092500 Sobic004G166700--Sobic006G092500 Sobic003G345100 Sobic003G345100 Sobic004G166700--Sobic003G345100 Sobic005G063100 Sobic005G063100 Sobic004G166700--Sobic005G063100 Sobic003G364300 Sobic003G364300 Sobic009G231000--Sobic003G364300 Sobic010G259600 Sobic010G259600 Sobic009G231000--Sobic010G259600 Sobic009G231000--Sobic001G325400 Sobic009G231000--Sobic006G039100 Sobic009G231000--Sobic002G125700 Sobic002G055700 Sobic002G055700 Sobic009G231000--Sobic002G055700 Sobic009G231000--Sobic003G087300 Sobic003G297600 Sobic003G297600 Sobic009G231000--Sobic003G297600 Sobic010G156500 Sobic010G156500 Sobic009G231000--Sobic010G156500 Sobic003G255200 Sobic003G255200 Sobic002G125700--Sobic003G255200 Sobic002G125700--Sobic001G503100 Sobic003G352300 Sobic003G352300 Sobic002G125700--Sobic003G352300 Sobic002G125700--Sobic010G259600 Sobic002G125700--Sobic001G325400 Sobic007G087200 Sobic007G087200 Sobic002G125700--Sobic007G087200 Sobic004G107700 Sobic004G107700 Sobic002G125700--Sobic004G107700 Sobic002G125700--Sobic009G231000 Sobic010G063000 Sobic010G063000 Sobic002G125700--Sobic010G063000 Sobic002G414600 Sobic002G414600 Sobic001G252300--Sobic002G414600 Sobic001G252300--Sobic004G166700 Sobic001G252300--Sobic005G051200 Sobic001G252300--Sobic004G208700 Sobic001G252300--Sobic001G317200 Sobic001G252300--Sobic003G297600 Sobic001G252300--Sobic002G416600 Sobic001G252300--Sobic008G050600 Sobic003G286600 Sobic003G286600 Sobic001G252300--Sobic003G286600
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.