Gene annotation
Transcriptome id Sobic.001G025300.1,Sobic.001G025300.2
Synonym Sb01g002410
Functional annotation hydrolase, alpha/beta fold family domain containing protein, expressed
UniProt A0A1Z5S400 , A0A1Z5S437
Pfam PF00561
Panther DB PTHR10992 PTHR10992:SF883
NCBI CDD KOG4178; Soluble epoxide hydrolase
KEGG Orthology -
Gene Ontology -


Orthologs (automatic annotation)
TAIR AT4G02340 : alpha/beta-Hydrolases superfamily protein
RAP-DB (Rice) LOC_Os03g61340.1 : hydrolase, alpha/beta fold family domain containing protein, expressed
MaizeGDB (Corn) Zm00025a016385 , Zm00025a016384 , Zm00025a008914
Brachypodium PNT69509 , KQK12345 , KQK12347 , KQK01560
Barley HORVU5Hr1G115720.9 , HORVU5Hr1G115720.8 , HORVU5Hr1G115720.7 , HORVU5Hr1G115720.4 , HORVU5Hr1G115720.1 , HORVU5Hr1G115780.1 , HORVU5Hr1G115780.2 , HORVU7Hr1G075860.1 , HORVU5Hr1G115720.5 , HORVU5Hr1G115720.3 , HORVU5Hr1G115720.2 , HORVU5Hr1G115800.1 , HORVU5Hr1G115720.16 , HORVU5Hr1G115720.15 , HORVU5Hr1G115720.13 , HORVU7Hr1G042520.1 , HORVU5Hr1G115720.10 , HORVU5Hr1G115720.18
Wheat TraesCS5B02G507300 , TraesCS5D02G507300 , TraesCS1D02G048000 , TraesCS5D02G507000 , TraesCS5B02G507200 , TraesCS3A02G536800 , TraesCS3A02G536800 , TraesCS4A02G366100 , TraesCS4A02G366100 , TraesCS5D02G507100 , TraesCS4A02G366000
Populus -


JBrowse

Open New Page


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.001G025101 - -
2 Sobic.002G416600 peroxidase precursor, putative, expressed K00430: peroxidase
3 Sobic.002G183200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./middle senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@expressed protein -
4 Sobic.003G286600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
5 Sobic.005G051200 SAG (Senescence-associated gene): up-regulated gene during salt-induced senescence.(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
6 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
7 Sobic.004G166700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@"Beta-fructofuranosidase, cell wall Invertase 2 (Os)"(PubMedID : 27208977)@glycosyl hydrolases, putative, expressed K01193: INV, beta-fructofuranosidase
8 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
9 Sobic.001G070800 expressed protein -
10 Sobic.010G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
11 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
12 Sobic.005G063100 expressed protein -
13 Sobic.003G087300 nuclease PA3, putative, expressed -
14 Sobic.001G252300 pectinesterase, putative, expressed K01051: pectinesterase
15 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
16 Sobic.010G176600 - -
17 Sobic.009G035200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@thioesterase family protein, putative, expressed -
18 Sobic.003G117600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence./late senescence marker (common during developmental, salt-induced, and dark-induced senescence)"(PubMedID : 27586543)@flowering promoting factor-like 1, putative, expressed -
19 Sobic.003G345100 flavonol synthase/flavanone 3-hydroxylase, putative, expressed -
20 Sobic.001G119100 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -


Gene co-expression network
sample Sobic001G025300 Sobic001G025300 Sobic001G025101 Sobic001G025101 Sobic001G025300--Sobic001G025101 Sobic002G416600 Sobic002G416600 Sobic001G025300--Sobic002G416600 Sobic002G183200 Sobic002G183200 Sobic001G025300--Sobic002G183200 Sobic003G286600 Sobic003G286600 Sobic001G025300--Sobic003G286600 Sobic005G051200 Sobic005G051200 Sobic001G025300--Sobic005G051200 Sobic001G317200 Sobic001G317200 Sobic001G025300--Sobic001G317200 Sobic004G166700 Sobic004G166700 Sobic001G025300--Sobic004G166700 Sobic006G099900 Sobic006G099900 Sobic001G025300--Sobic006G099900 Sobic001G070800 Sobic001G070800 Sobic001G025300--Sobic001G070800 Sobic001G025101--Sobic001G025300 Sobic001G025101--Sobic002G416600 Sobic003G088500 Sobic003G088500 Sobic001G025101--Sobic003G088500 Sobic001G025101--Sobic005G051200 Sobic003G087300 Sobic003G087300 Sobic001G025101--Sobic003G087300 Sobic001G025101--Sobic004G166700 Sobic004G245500 Sobic004G245500 Sobic001G025101--Sobic004G245500 Sobic010G044400 Sobic010G044400 Sobic001G025101--Sobic010G044400 Sobic003G345100 Sobic003G345100 Sobic001G025101--Sobic003G345100 Sobic002G416600--Sobic003G087300 Sobic002G416600--Sobic005G051200 Sobic002G416600--Sobic001G317200 Sobic002G416600--Sobic001G025300 Sobic002G416600--Sobic001G070800 Sobic002G416600--Sobic004G166700 Sobic008G050600 Sobic008G050600 Sobic002G416600--Sobic008G050600 Sobic001G252300 Sobic001G252300 Sobic002G416600--Sobic001G252300 Sobic010G239300 Sobic010G239300 Sobic002G416600--Sobic010G239300 Sobic002G183200--Sobic003G286600 Sobic005G091500 Sobic005G091500 Sobic002G183200--Sobic005G091500 Sobic004G189400 Sobic004G189400 Sobic002G183200--Sobic004G189400 Sobic002G183200--Sobic001G025300 Sobic001G119100 Sobic001G119100 Sobic002G183200--Sobic001G119100 Sobic010G176600 Sobic010G176600 Sobic002G183200--Sobic010G176600 Sobic002G183200--Sobic006G099900 Sobic002G183200--Sobic001G317200 Sobic010G084400 Sobic010G084400 Sobic002G183200--Sobic010G084400 Sobic003G286600--Sobic010G176600 Sobic003G286600--Sobic008G050600 Sobic005G063100 Sobic005G063100 Sobic003G286600--Sobic005G063100 Sobic003G286600--Sobic006G099900 Sobic004G208700 Sobic004G208700 Sobic003G286600--Sobic004G208700 Sobic002G140400 Sobic002G140400 Sobic003G286600--Sobic002G140400 Sobic003G286600--Sobic003G345100 Sobic003G317100 Sobic003G317100 Sobic003G286600--Sobic003G317100 Sobic009G164600 Sobic009G164600 Sobic003G286600--Sobic009G164600 Sobic005G051200--Sobic001G317200 Sobic009G035200 Sobic009G035200 Sobic005G051200--Sobic009G035200 Sobic005G051200--Sobic008G050600 Sobic005G051200--Sobic002G416600 Sobic005G051200--Sobic009G164600 Sobic005G051200--Sobic003G345100 Sobic005G051200--Sobic003G286600 Sobic005G051200--Sobic005G063100 Sobic005G051200--Sobic001G252300 Sobic001G317200--Sobic005G051200 Sobic001G317200--Sobic006G099900 Sobic003G252800 Sobic003G252800 Sobic001G317200--Sobic003G252800 Sobic001G317200--Sobic010G084400 Sobic001G317200--Sobic003G286600 Sobic001G317200--Sobic008G050600 Sobic003G240600 Sobic003G240600 Sobic001G317200--Sobic003G240600 Sobic005G101800 Sobic005G101800 Sobic001G317200--Sobic005G101800 Sobic001G317200--Sobic002G416600 Sobic004G166700--Sobic001G252300 Sobic009G229000 Sobic009G229000 Sobic004G166700--Sobic009G229000 Sobic004G166700--Sobic002G416600 Sobic009G234100 Sobic009G234100 Sobic004G166700--Sobic009G234100 Sobic004G166700--Sobic005G051200 Sobic004G166700--Sobic004G208700 Sobic006G092500 Sobic006G092500 Sobic004G166700--Sobic006G092500 Sobic004G166700--Sobic003G345100 Sobic004G166700--Sobic005G063100 Sobic007G227300 Sobic007G227300 Sobic006G099900--Sobic007G227300 Sobic006G099900--Sobic003G252800 Sobic006G099900--Sobic001G317200 Sobic006G099900--Sobic003G286600 Sobic006G099900--Sobic010G084400 Sobic006G099900--Sobic004G189400 Sobic006G099900--Sobic008G050600 Sobic006G099900--Sobic005G091500 Sobic006G277600 Sobic006G277600 Sobic006G099900--Sobic006G277600 Sobic003G297600 Sobic003G297600 Sobic001G070800--Sobic003G297600 Sobic009G077800 Sobic009G077800 Sobic001G070800--Sobic009G077800 Sobic003G393700 Sobic003G393700 Sobic001G070800--Sobic003G393700 Sobic001G070800--Sobic002G416600 Sobic009G139400 Sobic009G139400 Sobic001G070800--Sobic009G139400 Sobic001G177800 Sobic001G177800 Sobic001G070800--Sobic001G177800 Sobic001G070800--Sobic001G317200 Sobic001G070800--Sobic006G099900 Sobic001G070800--Sobic001G252300
Octagon: transcription factors


© 2015- RIKEN, All rights reserved.