Gene annotation
Transcriptome id Sobic.006G099900.1
Synonym Sb06g018350, ARPN
Functional annotation SAG (Senescence-associated gene): differentially expressed gene during developmental senescence. (PubMedID : 27586543)
plastocyanin-like domain containing protein, putative, expressed
UniProt C5Y9D7
Pfam PF02298
Panther DB PTHR33021 PTHR33021:SF38
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009055; electron transfer activity


Orthologs (automatic annotation)
TAIR AT2G02850 : plantacyanin
RAP-DB (Rice) LOC_Os03g50160.1 : plastocyanin-like domain containing protein, putative, expressed
MaizeGDB (Corn) Zm00025a056174
Brachypodium KQK13600
Barley HORVU4Hr1G007220.3 , HORVU4Hr1G007220.2 , HORVU4Hr1G007220.1 , HORVU5Hr1G122060.2 , HORVU5Hr1G122060.3 , HORVU5Hr1G122060.1 , HORVU5Hr1G121910.1 , HORVU5Hr1G122040.1
Wheat TraesCS5D02G539000 , TraesCS5D02G538900 , TraesCS5D02G539500 , TraesCS4A02G269400 , TraesCS4D02G042200 , TraesCS5D02G539200 , TraesCS4A02G333300 , TraesCS5B02G552800 , TraesCS5B02G552900 , TraesCS5B02G553000 , TraesCS4B02G044700 , TraesCS5B02G553100
Populus -


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Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G227300 plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.003G252800 hypothetical protein -
3 Sobic.001G317200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
4 Sobic.003G286600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase
5 Sobic.010G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
6 Sobic.004G189400 expressed protein -
7 Sobic.008G050600 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@Not investigated(PubMedID : 23766026)@ethylene-responsive transcription factor ERF110, putative, expressed -
8 Sobic.005G091500 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@permease domain containing protein, putative, expressed K06901: putative MFS transporter, AGZA family, xanthine/uracil permease
9 Sobic.006G277600 peroxidase precursor, putative, expressed K00430: peroxidase
10 Sobic.001G423800 DNA binding protein, putative, expressed -
11 Sobic.005G101800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
12 Sobic.001G177800 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
13 Sobic.005G063100 expressed protein -
14 Sobic.001G119400 microsomal glutathione S-transferase 3, putative, expressed K00799: GST, glutathione S-transferase
15 Sobic.003G317100 expressed protein -
16 Sobic.003G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@WRKY27, expressed -
17 Sobic.001G400800 pathogenesis-related Bet v I family protein, putative, expressed -
18 Sobic.002G199650 - -
19 Sobic.003G352300 triosephosphate isomerase(PubMedID : 27016024)@triosephosphate isomerase, cytosolic, putative, expressed K01803: TPI, triosephosphate isomerase (TIM)
20 Sobic.009G139400 expressed protein -


Gene co-expression network
sample Sobic006G099900 Sobic006G099900 Sobic007G227300 Sobic007G227300 Sobic006G099900--Sobic007G227300 Sobic003G252800 Sobic003G252800 Sobic006G099900--Sobic003G252800 Sobic001G317200 Sobic001G317200 Sobic006G099900--Sobic001G317200 Sobic003G286600 Sobic003G286600 Sobic006G099900--Sobic003G286600 Sobic010G084400 Sobic010G084400 Sobic006G099900--Sobic010G084400 Sobic004G189400 Sobic004G189400 Sobic006G099900--Sobic004G189400 Sobic008G050600 Sobic008G050600 Sobic006G099900--Sobic008G050600 Sobic005G091500 Sobic005G091500 Sobic006G099900--Sobic005G091500 Sobic006G277600 Sobic006G277600 Sobic006G099900--Sobic006G277600 Sobic007G227300--Sobic006G099900 Sobic003G200700 Sobic003G200700 Sobic007G227300--Sobic003G200700 Sobic001G400800 Sobic001G400800 Sobic007G227300--Sobic001G400800 Sobic007G227300--Sobic003G252800 Sobic006G268800 Sobic006G268800 Sobic007G227300--Sobic006G268800 Sobic007G227300--Sobic006G277600 Sobic004G148200 Sobic004G148200 Sobic007G227300--Sobic004G148200 Sobic009G240600 Sobic009G240600 Sobic007G227300--Sobic009G240600 Sobic005G206601 Sobic005G206601 Sobic007G227300--Sobic005G206601 Sobic003G252800--Sobic006G099900 Sobic003G252800--Sobic010G084400 Sobic001G348700 Sobic001G348700 Sobic003G252800--Sobic001G348700 Sobic003G252800--Sobic001G317200 Sobic005G101800 Sobic005G101800 Sobic003G252800--Sobic005G101800 Sobic003G252800--Sobic007G227300 Sobic010G117900 Sobic010G117900 Sobic003G252800--Sobic010G117900 Sobic009G128700 Sobic009G128700 Sobic003G252800--Sobic009G128700 Sobic004G221500 Sobic004G221500 Sobic003G252800--Sobic004G221500 Sobic005G051200 Sobic005G051200 Sobic001G317200--Sobic005G051200 Sobic001G317200--Sobic006G099900 Sobic001G317200--Sobic003G252800 Sobic001G317200--Sobic010G084400 Sobic001G317200--Sobic003G286600 Sobic001G317200--Sobic008G050600 Sobic003G240600 Sobic003G240600 Sobic001G317200--Sobic003G240600 Sobic001G317200--Sobic005G101800 Sobic002G416600 Sobic002G416600 Sobic001G317200--Sobic002G416600 Sobic010G176600 Sobic010G176600 Sobic003G286600--Sobic010G176600 Sobic003G286600--Sobic008G050600 Sobic005G063100 Sobic005G063100 Sobic003G286600--Sobic005G063100 Sobic003G286600--Sobic006G099900 Sobic004G208700 Sobic004G208700 Sobic003G286600--Sobic004G208700 Sobic002G140400 Sobic002G140400 Sobic003G286600--Sobic002G140400 Sobic003G345100 Sobic003G345100 Sobic003G286600--Sobic003G345100 Sobic003G317100 Sobic003G317100 Sobic003G286600--Sobic003G317100 Sobic009G164600 Sobic009G164600 Sobic003G286600--Sobic009G164600 Sobic010G084400--Sobic003G252800 Sobic010G084400--Sobic005G101800 Sobic010G084400--Sobic006G099900 Sobic010G084400--Sobic001G317200 Sobic010G084400--Sobic009G128700 Sobic010G084400--Sobic007G227300 Sobic010G084400--Sobic010G117900 Sobic010G239300 Sobic010G239300 Sobic010G084400--Sobic010G239300 Sobic010G084400--Sobic004G189400 Sobic004G189400--Sobic002G140400 Sobic004G189400--Sobic005G091500 Sobic002G263400 Sobic002G263400 Sobic004G189400--Sobic002G263400 Sobic004G189400--Sobic008G050600 Sobic004G237800 Sobic004G237800 Sobic004G189400--Sobic004G237800 Sobic003G382600 Sobic003G382600 Sobic004G189400--Sobic003G382600 Sobic004G189400--Sobic006G099900 Sobic008G136400 Sobic008G136400 Sobic004G189400--Sobic008G136400 Sobic005G029200 Sobic005G029200 Sobic004G189400--Sobic005G029200 Sobic008G050600--Sobic003G345100 Sobic001G140900 Sobic001G140900 Sobic008G050600--Sobic001G140900 Sobic008G050600--Sobic005G063100 Sobic008G050600--Sobic003G286600 Sobic008G050600--Sobic009G164600 Sobic001G038900 Sobic001G038900 Sobic008G050600--Sobic001G038900 Sobic008G050600--Sobic008G136400 Sobic008G050600--Sobic004G189400 Sobic008G050600--Sobic005G051200 Sobic005G091500--Sobic004G189400 Sobic005G091500--Sobic004G237800 Sobic005G091500--Sobic005G063100 Sobic005G091500--Sobic008G050600 Sobic002G055700 Sobic002G055700 Sobic005G091500--Sobic002G055700 Sobic005G091500--Sobic006G099900 Sobic005G091500--Sobic003G382600 Sobic009G159400 Sobic009G159400 Sobic005G091500--Sobic009G159400 Sobic005G091500--Sobic003G286600 Sobic002G354100 Sobic002G354100 Sobic006G277600--Sobic002G354100 Sobic001G231700 Sobic001G231700 Sobic006G277600--Sobic001G231700 Sobic003G117600 Sobic003G117600 Sobic006G277600--Sobic003G117600 Sobic006G277600--Sobic007G227300 Sobic006G277600--Sobic006G099900 Sobic001G503100 Sobic001G503100 Sobic006G277600--Sobic001G503100 Sobic007G184600 Sobic007G184600 Sobic006G277600--Sobic007G184600 Sobic009G111000 Sobic009G111000 Sobic006G277600--Sobic009G111000 Sobic006G277600--Sobic005G206601
Octagon: transcription factors


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