Gene annotation
Transcriptome id Sobic.001G400800.1
Synonym
Functional annotation pathogenesis-related Bet v I family protein, putative, expressed
UniProt Q4VQB4
Pfam PF00407
Panther DB PTHR31213 PTHR31213:SF20
NCBI CDD -
KEGG Orthology -
Gene Ontology GO:0009607; response to biotic stimulus GO:0006952defense response


Orthologs (automatic annotation)
TAIR AT2G40330 : PYR1-like 6
RAP-DB (Rice) LOC_Os03g18850.1 : pathogenesis-related Bet v I family protein, putative, expressed
MaizeGDB (Corn) Zm00025a002072 , Zm00025a002073
Brachypodium KQK22066
Barley HORVU4Hr1G054870.3 , HORVU4Hr1G054870.6 , HORVU4Hr1G054870.7 , HORVU4Hr1G054870.4 , HORVU4Hr1G054870.5
Wheat TraesCS4A02G116400 , TraesCS2B02G442700 , TraesCS2D02G317800 , TraesCS2B02G500200 , TraesCS4B02G187800 , TraesCS2A02G423300 , TraesCS7D02G164500 , TraesCS2B02G500100 , TraesCS4D02G189200 , TraesCS4D02G189200 , TraesCS7A02G162600 , TraesCS2D02G420900 , TraesCS1B02G115600 , TraesCS2B02G500300
Populus -


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cDNA sequences
Sobic.001G400800


Expression pattern by RNA-Seq analysis
FPKM plot


Find similar expressed genes
Top 20 genes with similar expressed profiles

Rank Gene Function KEGG orthology
1 Sobic.007G227300 plastocyanin-like domain containing protein, putative, expressed -
2 Sobic.001G400700 pathogenesis-related Bet v I family protein, putative, expressed -
3 Sobic.004G245800 SAG (Senescence-associated gene): up-regulated gene during dark-induced senescence.(PubMedID : 27586543)@expressed protein -
4 Sobic.005G101800 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@dirigent, putative, expressed -
5 Sobic.003G252800 hypothetical protein -
6 Sobic.001G177800 ribosomal protein, putative, expressed K02866: RP-L10e, large subunit ribosomal protein L10e
7 Sobic.006G099900 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@plastocyanin-like domain containing protein, putative, expressed -
8 Sobic.010G084400 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@highly upregulated during chilling in a chilling tolerant sorghum NSG(PubMedID : 29293808)@12-oxophytodienoate reductase, putative, expressed K05894: 12-oxophytodienoic acid reductase
9 Sobic.001G187200 expressed protein -
10 Sobic.005G206601 - -
11 Sobic.006G268800 transporter family protein, putative, expressed -
12 Sobic.004G189400 expressed protein -
13 Sobic.004G148200 Cupin domain containing protein, expressed -
14 Sobic.003G200700 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence./late senescence marker during developmental senescence(PubMedID : 27586543)@WRKY27, expressed -
15 Sobic.006G277600 peroxidase precursor, putative, expressed K00430: peroxidase
16 Sobic.001G318600 glutathione S-transferase, putative, expressed K00799: GST, glutathione S-transferase
17 Sobic.001G192200 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@cytochrome P450, putative, expressed -
18 Sobic.005G101700 dirigent, putative, expressed -
19 Sobic.010G117900 "SAG (Senescence-associated gene): differentially expressed gene during developmental, salt-induced, and dark-induced senescence."(PubMedID : 27586543)@oxidoreductase, aldo/keto reductase family protein, putative, expressed -
20 Sobic.003G286600 SAG (Senescence-associated gene): differentially expressed gene during developmental senescence.(PubMedID : 27586543)@sphingolipid C4-hydroxylase SUR2, putative, expressed K04713: sphinganine C4-monooxygenase


Gene co-expression network
sample Sobic001G400800 Sobic001G400800 Sobic007G227300 Sobic007G227300 Sobic001G400800--Sobic007G227300 Sobic001G400700 Sobic001G400700 Sobic001G400800--Sobic001G400700 Sobic004G245800 Sobic004G245800 Sobic001G400800--Sobic004G245800 Sobic005G101800 Sobic005G101800 Sobic001G400800--Sobic005G101800 Sobic003G252800 Sobic003G252800 Sobic001G400800--Sobic003G252800 Sobic001G177800 Sobic001G177800 Sobic001G400800--Sobic001G177800 Sobic006G099900 Sobic006G099900 Sobic001G400800--Sobic006G099900 Sobic010G084400 Sobic010G084400 Sobic001G400800--Sobic010G084400 Sobic001G187200 Sobic001G187200 Sobic001G400800--Sobic001G187200 Sobic007G227300--Sobic006G099900 Sobic003G200700 Sobic003G200700 Sobic007G227300--Sobic003G200700 Sobic007G227300--Sobic001G400800 Sobic007G227300--Sobic003G252800 Sobic006G268800 Sobic006G268800 Sobic007G227300--Sobic006G268800 Sobic006G277600 Sobic006G277600 Sobic007G227300--Sobic006G277600 Sobic004G148200 Sobic004G148200 Sobic007G227300--Sobic004G148200 Sobic009G240600 Sobic009G240600 Sobic007G227300--Sobic009G240600 Sobic005G206601 Sobic005G206601 Sobic007G227300--Sobic005G206601 Sobic001G400700--Sobic001G400800 Sobic001G400700--Sobic005G101800 Sobic001G400700--Sobic004G245800 Sobic003G286600 Sobic003G286600 Sobic001G400700--Sobic003G286600 Sobic001G400700--Sobic001G177800 Sobic010G176600 Sobic010G176600 Sobic001G400700--Sobic010G176600 Sobic001G400700--Sobic003G252800 Sobic002G183200 Sobic002G183200 Sobic001G400700--Sobic002G183200 Sobic001G400700--Sobic006G099900 Sobic004G245800--Sobic001G400800 Sobic004G245800--Sobic001G400700 Sobic004G245800--Sobic005G101800 Sobic004G245800--Sobic001G187200 Sobic004G245800--Sobic001G177800 Sobic004G245800--Sobic003G252800 Sobic004G245800--Sobic007G227300 Sobic004G245800--Sobic010G084400 Sobic005G029200 Sobic005G029200 Sobic004G245800--Sobic005G029200 Sobic005G101800--Sobic010G084400 Sobic010G117900 Sobic010G117900 Sobic005G101800--Sobic010G117900 Sobic005G101800--Sobic003G252800 Sobic005G101800--Sobic007G227300 Sobic001G317200 Sobic001G317200 Sobic005G101800--Sobic001G317200 Sobic003G426300 Sobic003G426300 Sobic005G101800--Sobic003G426300 Sobic005G101800--Sobic006G099900 Sobic009G128700 Sobic009G128700 Sobic005G101800--Sobic009G128700 Sobic005G101800--Sobic001G400800 Sobic003G252800--Sobic006G099900 Sobic003G252800--Sobic010G084400 Sobic001G348700 Sobic001G348700 Sobic003G252800--Sobic001G348700 Sobic003G252800--Sobic001G317200 Sobic003G252800--Sobic005G101800 Sobic003G252800--Sobic007G227300 Sobic003G252800--Sobic010G117900 Sobic003G252800--Sobic009G128700 Sobic004G221500 Sobic004G221500 Sobic003G252800--Sobic004G221500 Sobic007G184600 Sobic007G184600 Sobic001G177800--Sobic007G184600 Sobic009G139400 Sobic009G139400 Sobic001G177800--Sobic009G139400 Sobic001G374700 Sobic001G374700 Sobic001G177800--Sobic001G374700 Sobic001G402050 Sobic001G402050 Sobic001G177800--Sobic001G402050 Sobic001G177800--Sobic007G227300 Sobic002G200600 Sobic002G200600 Sobic001G177800--Sobic002G200600 Sobic004G189400 Sobic004G189400 Sobic001G177800--Sobic004G189400 Sobic001G177800--Sobic006G099900 Sobic010G009300 Sobic010G009300 Sobic001G177800--Sobic010G009300 Sobic006G099900--Sobic007G227300 Sobic006G099900--Sobic003G252800 Sobic006G099900--Sobic001G317200 Sobic006G099900--Sobic003G286600 Sobic006G099900--Sobic010G084400 Sobic006G099900--Sobic004G189400 Sobic008G050600 Sobic008G050600 Sobic006G099900--Sobic008G050600 Sobic005G091500 Sobic005G091500 Sobic006G099900--Sobic005G091500 Sobic006G099900--Sobic006G277600 Sobic010G084400--Sobic003G252800 Sobic010G084400--Sobic005G101800 Sobic010G084400--Sobic006G099900 Sobic010G084400--Sobic001G317200 Sobic010G084400--Sobic009G128700 Sobic010G084400--Sobic007G227300 Sobic010G084400--Sobic010G117900 Sobic010G239300 Sobic010G239300 Sobic010G084400--Sobic010G239300 Sobic010G084400--Sobic004G189400 Sobic001G187200--Sobic001G177800 Sobic001G187200--Sobic006G268800 Sobic005G011200 Sobic005G011200 Sobic001G187200--Sobic005G011200 Sobic001G187200--Sobic001G400800 Sobic001G187200--Sobic007G227300 Sobic001G402200 Sobic001G402200 Sobic001G187200--Sobic001G402200 Sobic003G307801 Sobic003G307801 Sobic001G187200--Sobic003G307801 Sobic001G187200--Sobic004G148200 Sobic007G061300 Sobic007G061300 Sobic001G187200--Sobic007G061300
Octagon: transcription factors


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